RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 OR52I2Q8NH67 350 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 TM9SF4Q92544 642 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 PHF21AQ96BD5 680 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 NSUN4Q96CB9 384 aaKnown RBP2.67□□□□□ -1.98
CD44-238ENST00000534296 ELMOD3Q96FG2 381 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 ST6GAL2Q96JF0 529 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 SEPT5Q99719 369 aaPredicted RBP2.67□□□□□ -1.98
CD44-238ENST00000534296 SEMA3CQ99985 751 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 BARHL1Q9BZE3 327 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 HRH4Q9H3N8 390 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 SCPEP1Q9HB40 452 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 SLC35C2Q9NQQ7 365 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 ARHGEF38Q9NXL2 777 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 CNOT8Q9UFF9 292 aaKnown RBP2.67□□□□□ -1.98
CD44-238ENST00000534296 DBNLQ9UJU6 430 aaKnown RBP2.67□□□□□ -1.98
CD44-238ENST00000534296 NENFQ9UMX5 172 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 GAB2Q9UQC2 676 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 ADAM18Q9Y3Q7 739 aa2.67□□□□□ -1.98
CD44-238ENST00000534296 ZNF644Q9H582 1327 aaPredicted RBP2.67□□□□□ -1.98
CD44-238ENST00000534296 A0A1W2PQ09 198 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 C1orf226A1L170 272 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 FRMD3A2A2Y4 597 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 OR5K3A6NET4 321 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 A6NL46 340 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 FAM90A26D6RGX4 464 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 ZBTB43O43298 467 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 TMCC2O75069 709 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 SERPINB2P05120 415 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 CENPBP07199 599 aaPredicted RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 PORP16435 677 aaPredicted RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 ANXA7P20073 488 aaKnown RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 UGT1A1P22309 533 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 SP100P23497 879 aaPredicted RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 MCCP23508 829 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 NNMTP40261 264 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 HADHAP40939 763 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 SLC15A1P46059 708 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 GLIPR1P48060 266 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 STAT2P52630 851 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 CTSCP53634 463 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 TAS2R40P59535 323 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 CDC16Q13042 620 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 STK4Q13043 487 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 KCTD2Q14681 263 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 C15orf59Q2T9L4 293 aaPredicted RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 PCGF3Q3KNV8 242 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 DUSP28Q4G0W2 176 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 CDONQ4KMG0 1287 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 STXBP5Q5T5C0 1151 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 ZDHHC20Q5W0Z9 365 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 ZNF449Q6P9G9 518 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 PACS1Q6VY07 963 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 MARK2Q7KZI7 788 aaKnown RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 NRROSQ86YC3 692 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 PM20D2Q8IYS1 436 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 SLC5A8Q8N695 610 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 EMC1Q8N766 993 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 POC5Q8NA72 575 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 POMGNT2Q8NAT1 580 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 ACVR1CQ8NER5 493 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 OR5R1Q8NH85 324 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 HMGCLL1Q8TB92 370 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 HM13Q8TCT9 377 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 PERPQ96FX8 193 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 PGLYRP2Q96PD5 576 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 APOL6Q9BWW8 343 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 TFB2MQ9H5Q4 396 aaKnown RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 DNAJC18Q9H819 358 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 CHMP1AQ9HD42 196 aaPredicted RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 PSD3Q9NYI0 1048 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 TAB2Q9NYJ8 693 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 FBXL17Q9UF56 701 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 SEC63Q9UGP8 760 aaKnown RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 PCDHGB4Q9UN71 923 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 CMAHPQ9Y471 501 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 JRKLQ9Y4A0 524 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 RPS6KL1Q9Y6S9 549 aa2.66□□□□□ -1.98
CD44-238ENST00000534296 RSF1Q96T23 1441 aaPredicted RBP2.66□□□□□ -1.98
CD44-238ENST00000534296 PMS2P5A8MQ11 134 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 A8MZ25 164 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 H0YIN7 160 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 BLOC1S5-TXNDC5H3BN57 136 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 TMEM178BH3BS89 294 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 IFNL4K9M1U5 179 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 ATP2A1O14983 1001 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 AVILO75366 819 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 BEST1O76090 585 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 TUBBP07437 444 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 PON1P27169 355 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 HOXA13P31271 388 aaPredicted RBP2.65□□□□□ -1.99
CD44-238ENST00000534296 APOBEC1P41238 236 aaKnown RBP2.65□□□□□ -1.99
CD44-238ENST00000534296 MSH2P43246 934 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 NRIP1P48552 1158 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 NR2C2P49116 596 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 LIG4P49917 911 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 ARSEP51690 589 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 ATP12AP54707 1039 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 ERVK11-1P61568 191 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 TUBB4BP68371 445 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 TMEM266Q2M3C6 531 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms