RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 IL17BQ9UHF5 180 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 CDH22Q9UJ99 828 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 NAALADL1Q9UQQ1 740 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 RPS6KL1Q9Y6S9 549 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 SPG11Q96JI7 2443 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 SHROOM3Q8TF72 1996 aa3.96□□□□□ -1.78
CD44-235ENST00000532339 URB1O60287 2271 aaKnown RBP3.96□□□□□ -1.78
CD44-235ENST00000532339 EVPLQ92817 2033 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 NOTCH4Q99466 2003 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 USP9YO00507 2555 aaPredicted RBP3.95□□□□□ -1.78
CD44-235ENST00000532339 KANSL1LA0AUZ9 987 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 GUCY1B2O75343 617 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 METTL18O95568 372 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 HOXB7P09629 217 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 ARSAP15289 507 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 GNLYP22749 145 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 PRKCHP24723 683 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 GSTM2P28161 218 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 COMPP49747 757 aaPredicted RBP3.95□□□□□ -1.78
CD44-235ENST00000532339 SEC61A1P61619 476 aaKnown RBP3.95□□□□□ -1.78
CD44-235ENST00000532339 KIF5AQ12840 1032 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 PRKG2Q13237 762 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 ALKBH1Q13686 389 aaKnown RBP3.95□□□□□ -1.78
CD44-235ENST00000532339 PTGISQ16647 500 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 RUNDC3AQ59EK9 446 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 SPATA1Q5VX52 437 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 HAUS3Q68CZ6 603 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 C16orf54Q6UWD8 224 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 PRSS57Q6UWY2 283 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 ARMCX2Q7L311 632 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 SCN4BQ8IWT1 228 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 CLIP4Q8N3C7 705 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 DBF4BQ8NFT6 615 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 OR14A16Q8NHC5 309 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 RFWD2Q8NHY2 731 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 NFKBIDQ8NI38 313 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 SLC35F5Q8WV83 523 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 CASP10Q92851 521 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 NEUROD6Q96NK8 337 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 FRG2BQ96QU4 278 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 CLSTN3Q9BQT9 956 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 TRIM31Q9BZY9 425 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 USP44Q9H0E7 712 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 PRORYQ9H606 182 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 HDAC6Q9UBN7 1215 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 SLC25A10Q9UBX3 287 aaPredicted RBP3.95□□□□□ -1.78
CD44-235ENST00000532339 PLEKHB1Q9UF11 243 aaPredicted RBP3.95□□□□□ -1.78
CD44-235ENST00000532339 ICAM5Q9UMF0 924 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 KNSTRNQ9Y448 316 aa3.95□□□□□ -1.78
CD44-235ENST00000532339 SRPRBQ9Y5M8 271 aaKnown RBP3.95□□□□□ -1.78
CD44-235ENST00000532339 ITPR2Q14571 2701 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 PATJQ8NI35 1801 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 C17orf102A2RUQ5 167 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 DENND3A2RUS2 1198 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 PI4KAP2A4QPH2 592 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 SHISA7A6NL88 538 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 C17orf100A8MU93 164 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 GFPT2O94808 682 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 IGKV3-20P01619 116 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 IGKV5-2P06315 115 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 TDGF1P13385 188 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 EPHA8P29322 1005 aaPredicted RBP3.94□□□□□ -1.78
CD44-235ENST00000532339 TYK2P29597 1187 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 BTDP43251 543 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 PPP3CCP48454 512 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 NUDT6P53370 316 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 PTP4A2Q12974 167 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 PKP1Q13835 747 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 PDE1CQ14123 709 aaPredicted RBP3.94□□□□□ -1.78
CD44-235ENST00000532339 BTG3Q14201 252 aaPredicted RBP3.94□□□□□ -1.78
CD44-235ENST00000532339 LY6DQ14210 128 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 TOMM20Q15388 145 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 SHROOM1Q2M3G4 852 aaPredicted RBP3.94□□□□□ -1.78
CD44-235ENST00000532339 GXYLT1Q4G148 440 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 SH2D4BQ5SQS7 431 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 FAM69AQ5T7M9 428 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 INO80CQ6PI98 192 aaPredicted RBP3.94□□□□□ -1.78
CD44-235ENST00000532339 SPSB3Q6PJ21 355 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 TMTC3Q6ZXV5 915 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 USP43Q70EL4 1123 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 FJX1Q86VR8 437 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 PALB2Q86YC2 1186 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 FOXP4Q8IVH2 680 aaPredicted RBP3.94□□□□□ -1.78
CD44-235ENST00000532339 ZMIZ2Q8NF64 920 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 CEP76Q8TAP6 659 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 TMEM163Q8TC26 289 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 RUFY2Q8WXA3 655 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 KCNJ9Q92806 393 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 RTP4Q96DX8 246 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 IFT27Q9BW83 186 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 INTS2Q9H0H0 1204 aaKnown RBP3.94□□□□□ -1.78
CD44-235ENST00000532339 SLC25A18Q9H1K4 315 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 ARRDC1-AS1Q9H2J1 176 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 BEX4Q9NWD9 120 aaPredicted RBP3.94□□□□□ -1.78
CD44-235ENST00000532339 KLQ9UEF7 1012 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 SUFUQ9UMX1 484 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 NUDCQ9Y266 331 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 FLNCQ14315 2725 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 CSMD1Q96PZ7 3565 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 KDM3AQ9Y4C1 1321 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms