RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	TM7SF3	Q9NS93	570 aa		5.61	□□□□□ -1.51
CD44-231	ENST00000531110	RXFP3	Q9NSD7	469 aa		5.61	□□□□□ -1.51
CD44-231	ENST00000531110	DDX18	Q9NVP1	670 aa	Known RBP	5.61	□□□□□ -1.51
CD44-231	ENST00000531110	SENP1	Q9P0U3	644 aa		5.61	□□□□□ -1.51
CD44-231	ENST00000531110	RNF14	Q9UBS8	474 aa		5.61	□□□□□ -1.51
CD44-231	ENST00000531110	CHORDC1	Q9UHD1	332 aa	Predicted RBP	5.61	□□□□□ -1.51
CD44-231	ENST00000531110	SH3BGRL2	Q9UJC5	107 aa		5.61	□□□□□ -1.51
CD44-231	ENST00000531110	GMEB2	Q9UKD1	530 aa		5.61	□□□□□ -1.51
CD44-231	ENST00000531110	BAG5	Q9UL15	447 aa		5.61	□□□□□ -1.51
CD44-231	ENST00000531110	CA14	Q9ULX7	337 aa		5.61	□□□□□ -1.51
CD44-231	ENST00000531110	MAGED1	Q9Y5V3	778 aa	Predicted RBP	5.61	□□□□□ -1.51
CD44-231	ENST00000531110	PCF11	O94913	1555 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ADGRL2	O95490	1459 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ARHGAP35	Q9NRY4	1499 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	TRAPPC8	Q9Y2L5	1435 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	UMODL1	Q5DID0	1318 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	SPATA31A6	Q5VVP1	1343 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	STK36	Q9NRP7	1315 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	TYW5	A2RUC4	315 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	VPS37C	A5D8V6	355 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110		A8MXQ7	604 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110		H0YIV9	168 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	KPNA4	O00629	521 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	CASC3	O15234	703 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	SLC22A2	O15244	555 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	PIP5K1C	O60331	668 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	PEX11A	O75192	247 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	CDH16	O75309	829 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	TRMU	O75648	421 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ASNS	P08243	561 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ACTN1	P12814	892 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	HGF	P14210	728 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ENG	P17813	658 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	EGR1	P18146	543 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	F8A1	P23610	371 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	GABRB3	P28472	473 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	STX2	P32856	288 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	SPAM1	P38567	509 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	CCT3	P49368	545 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	CLCN4	P51793	760 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	NAA20	P61599	178 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	NCALD	P61601	193 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	RPL10A	P62906	217 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	HOXA4	Q00056	320 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	E2F1	Q01094	437 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	PMS2P11	Q13670	270 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ATP1A4	Q13733	1029 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	COTL1	Q14019	142 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	GALNT3	Q14435	633 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	SLC35G1	Q2M3R5	365 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	FAM83B	Q5T0W9	1011 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	FAXC	Q5TGI0	409 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	AGAP7P	Q5VUJ5	663 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	PAPD7	Q5XG87	772 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ANKRD40	Q6AI12	368 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ZYG11A	Q6WRX3	759 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	KIAA0408	Q6ZU52	694 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	USP49	Q70CQ1	688 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	LPCAT2	Q7L5N7	544 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	TBC1D1	Q86TI0	1168 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	PRUNE1	Q86TP1	453 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ZNF354C	Q86Y25	554 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	HPS6	Q86YV9	775 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	TMEM139	Q8IV31	216 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ARL14	Q8N4G2	192 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	DPP10	Q8N608	796 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	PLD5	Q8N7P1	536 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	NAT8L	Q8N9F0	302 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	DENND6B	Q8NEG7	585 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	MCOLN3	Q8TDD5	553 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	HASPIN	Q8TF76	798 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	DEPDC1B	Q8WUY9	529 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	SHC3	Q92529	594 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	TTC25	Q96NG3	672 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	SERPINB12	Q96P63	405 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	LENG8	Q96PV6	779 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	WDR24	Q96S15	920 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	RIT2	Q99578	217 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	KATNAL1	Q9BW62	490 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	RBM38	Q9H0Z9	239 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	TRIM45	Q9H8W5	580 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	INTS10	Q9NVR2	710 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	NKIRAS2	Q9NYR9	191 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	STX18	Q9P2W9	335 aa	Known RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	MTRR	Q9UBK8	725 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	FETUB	Q9UGM5	382 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ZNF112	Q9UJU3	913 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	CCNL1	Q9UK58	526 aa	Predicted RBP	5.6	□□□□□ -1.51
CD44-231	ENST00000531110	CDH7	Q9ULB5	785 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	DERA	Q9Y315	318 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	USP16	Q9Y5T5	823 aa		5.6	□□□□□ -1.51
CD44-231	ENST00000531110	ZNF518A	Q6AHZ1	1483 aa		5.59	□□□□□ -1.51
CD44-231	ENST00000531110	MAGI2	Q86UL8	1455 aa		5.59	□□□□□ -1.51
CD44-231	ENST00000531110	NSD3	Q9BZ95	1437 aa		5.59	□□□□□ -1.51
CD44-231	ENST00000531110	AOX1	Q06278	1338 aa		5.59	□□□□□ -1.51
CD44-231	ENST00000531110	C16orf96	A6NNT2	1141 aa		5.59	□□□□□ -1.51
CD44-231	ENST00000531110	FAM25A	B3EWG3	89 aa		5.59	□□□□□ -1.51
CD44-231	ENST00000531110	FAM25C	B3EWG5	89 aa		5.59	□□□□□ -1.51
CD44-231	ENST00000531110	FAM25G	B3EWG6	89 aa		5.59	□□□□□ -1.51

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