RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 UBP1Q9NZI7 540 aa23.08■■□□□ 1.29
CPSF1-202ENST00000527827 PPP1R12AO14974 1030 aaPredicted RBP23.07■■□□□ 1.28
CPSF1-202ENST00000527827 KCNJ13O60928 360 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 EBLN1P0CF75 366 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 CA5AP35218 305 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 HMGCLP35914 325 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 CTSCP53634 463 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 RPS18P62269 152 aaKnown RBP23.07■■□□□ 1.28
CPSF1-202ENST00000527827 LAMB3Q13751 1172 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 NOMO1Q15155 1222 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 UGT8Q16880 541 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 CCDC70Q6NSX1 233 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 CAVIN1Q6NZI2 390 aaKnown RBP23.07■■□□□ 1.28
CPSF1-202ENST00000527827 FAM83HQ6ZRV2 1179 aaPredicted RBP23.07■■□□□ 1.28
CPSF1-202ENST00000527827 AMZ2Q86W34 360 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 TTC30BQ8N4P2 665 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 RASGEF1AQ8N9B8 481 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 BRSK1Q8TDC3 778 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 MAP3K3Q99759 626 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 PSMD13Q9UNM6 376 aa23.07■■□□□ 1.28
CPSF1-202ENST00000527827 SHANK1Q9Y566 2161 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 A0A0A6YYK5 440 aaPredicted RBP23.06■■□□□ 1.28
CPSF1-202ENST00000527827 POP7O75817 140 aaKnown RBP23.06■■□□□ 1.28
CPSF1-202ENST00000527827 PTPN3P26045 913 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 PTPN4P29074 926 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 HNRNPH3P31942 346 aaKnown RBP23.06■■□□□ 1.28
CPSF1-202ENST00000527827 SLC18A3Q16572 532 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 BPHLQ86WA6 291 aaPredicted RBP23.06■■□□□ 1.28
CPSF1-202ENST00000527827 DTX3LQ8TDB6 740 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 TEKT5Q96M29 485 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 TTC25Q96NG3 672 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 MAK16Q9BXY0 300 aaKnown RBP23.06■■□□□ 1.28
CPSF1-202ENST00000527827 GPR87Q9BY21 358 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 LRRC4CQ9HCJ2 640 aa23.06■■□□□ 1.28
CPSF1-202ENST00000527827 LOC285095A0A1B0GVY8 99 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 GPR39O43194 453 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 UGT1A9O60656 530 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 ZFXP17010 805 aaPredicted RBP23.05■■□□□ 1.28
CPSF1-202ENST00000527827 UGT1A6P19224 532 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 UGT1A1P22309 533 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 UGT1A4P22310 534 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 CD68P34810 354 aaPredicted RBP23.05■■□□□ 1.28
CPSF1-202ENST00000527827 ACY1Q03154 408 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 CHRNA6Q15825 494 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 ASTE1Q2TB18 679 aaPredicted RBP23.05■■□□□ 1.28
CPSF1-202ENST00000527827 CPZQ66K79 652 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 CAPRIN2Q6IMN6 1127 aaKnown RBP23.05■■□□□ 1.28
CPSF1-202ENST00000527827 KMT5CQ86Y97 462 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 RFX6Q8HWS3 928 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 SEC14L1Q92503 715 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 ZNF514Q96K75 400 aaPredicted RBP23.05■■□□□ 1.28
CPSF1-202ENST00000527827 UGT1A7Q9HAW7 530 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 UGT1A10Q9HAW8 530 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 UGT1A8Q9HAW9 530 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 FGF21Q9NSA1 209 aa23.05■■□□□ 1.28
CPSF1-202ENST00000527827 TTLL8A6PVC2 850 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 VPS4BO75351 444 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 TMEM253P0C7T8 217 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 GNLYP22749 145 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 IL10RAQ13651 578 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 NFE2L1Q14494 772 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 C4orf17Q53FE4 359 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 KLHL35Q6PF15 583 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 KDELC1Q6UW63 502 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 SYVN1Q86TM6 617 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 D2HGDHQ8N465 521 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 GALNT11Q8NCW6 608 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 SLC35G2Q8TBE7 412 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 THAP4Q8WY91 577 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 RNF25Q96BH1 459 aaPredicted RBP23.04■■□□□ 1.28
CPSF1-202ENST00000527827 TRABDQ9H4I3 376 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 MLXIPLQ9NP71 852 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 IL17CQ9P0M4 197 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 VPS4AQ9UN37 437 aa23.04■■□□□ 1.28
CPSF1-202ENST00000527827 DNMT3AQ9Y6K1 912 aaPredicted RBP23.04■■□□□ 1.28
CPSF1-202ENST00000527827 SPTBP11277 2137 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 OR5K3A6NET4 321 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 TLCD2A6NGC4 264 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 GAPDHSO14556 408 aaPredicted RBP23.03■■□□□ 1.28
CPSF1-202ENST00000527827 KRT1P04264 644 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 SPAM1P38567 509 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 WNT3AP56704 352 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 DYNLT1P63172 113 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 TPM4P67936 248 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 CHAF1BQ13112 559 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 PLCL1Q15111 1095 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 PRKD1Q15139 912 aaPredicted RBP23.03■■□□□ 1.28
CPSF1-202ENST00000527827 NADK2Q4G0N4 442 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 DNTTIP2Q5QJE6 756 aaKnown RBP23.03■■□□□ 1.28
CPSF1-202ENST00000527827 LDLRAP1Q5SW96 308 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 HIST2H2BCQ6DN03 193 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 TMEM220Q6QAJ8 160 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 FAM151BQ6UXP7 276 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 DDHD1Q8NEL9 900 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 CPT1CQ8TCG5 803 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 CD180Q99467 661 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 ZCCHC2Q9C0B9 1178 aaKnown RBP23.03■■□□□ 1.28
CPSF1-202ENST00000527827 FAM153AQ9UHL3 310 aa23.03■■□□□ 1.28
CPSF1-202ENST00000527827 OR2AG2A6NM03 316 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 MTHFD1P11586 935 aaKnown RBP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms