RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ZDHHC1Q8WTX9 485 aa10□□□□□ -0.81
VPS28-204ENST00000526054 PEX13Q92968 403 aa10□□□□□ -0.81
VPS28-204ENST00000526054 GLYATL1Q969I3 302 aa10□□□□□ -0.81
VPS28-204ENST00000526054 COX14Q96I36 57 aa10□□□□□ -0.81
VPS28-204ENST00000526054 DNAJC1Q96KC8 554 aaKnown RBP10□□□□□ -0.81
VPS28-204ENST00000526054 VPS35Q96QK1 796 aa10□□□□□ -0.81
VPS28-204ENST00000526054 ARHGAP9Q9BRR9 750 aa10□□□□□ -0.81
VPS28-204ENST00000526054 ZCCHC2Q9C0B9 1178 aaKnown RBP10□□□□□ -0.81
VPS28-204ENST00000526054 IL22Q9GZX6 179 aa10□□□□□ -0.81
VPS28-204ENST00000526054 SEMA6CQ9H3T2 930 aa10□□□□□ -0.81
VPS28-204ENST00000526054 RDH14Q9HBH5 336 aa10□□□□□ -0.81
VPS28-204ENST00000526054 IL26Q9NPH9 171 aa10□□□□□ -0.81
VPS28-204ENST00000526054 NLE1Q9NVX2 485 aaPredicted RBP10□□□□□ -0.81
VPS28-204ENST00000526054 SMOXQ9NWM0 555 aa10□□□□□ -0.81
VPS28-204ENST00000526054 FOXJ2Q9P0K8 574 aa10□□□□□ -0.81
VPS28-204ENST00000526054 AKAP7Q9P0M2 348 aaPredicted RBP10□□□□□ -0.81
VPS28-204ENST00000526054 VPS18Q9P253 973 aa10□□□□□ -0.81
VPS28-204ENST00000526054 SLC17A4Q9Y2C5 497 aa10□□□□□ -0.81
VPS28-204ENST00000526054 TCAF1Q9Y4C2 921 aa10□□□□□ -0.81
VPS28-204ENST00000526054 KCTD3Q9Y597 815 aa10□□□□□ -0.81
VPS28-204ENST00000526054 PCDHB11Q9Y5F2 797 aa10□□□□□ -0.81
VPS28-204ENST00000526054 BSNQ9UPA5 3926 aa10□□□□□ -0.81
VPS28-204ENST00000526054 TCRBV7S3A2A0A539 114 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 FAM187AA6NFU0 413 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 MROH6A6NGR9 719 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 H7C0S8 307 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 PYCARD-AS1I3L0S3 204 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 SMAPO00193 183 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ZW10O43264 779 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 SRP72O76094 671 aaKnown RBP9.99□□□□□ -0.81
VPS28-204ENST00000526054 ITGB2P05107 769 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 CEACAM5P06731 702 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 IVLP07476 585 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 MLNP12872 115 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 CD82P27701 267 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ALDH4A1P30038 563 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 TMPRSS15P98073 1019 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 B4GALNT1Q00973 533 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 NFATC3Q12968 1075 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 GTF2H3Q13889 308 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 PTPRCAPQ14761 206 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 C16orf72Q14CZ0 275 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 CHRNA6Q15825 494 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 KCTD19Q17RG1 926 aaPredicted RBP9.99□□□□□ -0.81
VPS28-204ENST00000526054 ATP13A5Q4VNC0 1218 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 CCDC38Q502W7 563 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 PCID2Q5JVF3 399 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 LDLRAP1Q5SW96 308 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 RNASEH2BQ5TBB1 312 aaKnown RBP9.99□□□□□ -0.81
VPS28-204ENST00000526054 TMEM164Q5U3C3 297 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ANKRD22Q5VYY1 191 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 IZUMO3Q5VZ72 239 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ARMC3Q5W041 872 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ZNF534Q76KX8 674 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ZNF438Q7Z4V0 828 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 PIM3Q86V86 326 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 HOOK3Q86VS8 718 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ZFAND4Q86XD8 727 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 GALNT13Q8IUC8 556 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 NAT8LQ8N9F0 302 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ZSCAN1Q8NBB4 408 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 MNS1Q8NEH6 495 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 OR13C4Q8NGS5 318 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 GDAP1Q8TB36 358 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ZNF398Q8TD17 642 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 GPBAR1Q8TDU6 330 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 PTCD2Q8WV60 388 aaKnown RBP9.99□□□□□ -0.81
VPS28-204ENST00000526054 EXTL1Q92935 676 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 USP7Q93009 1102 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ULK4Q96C45 1275 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 SNF8Q96H20 258 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 NUDT22Q9BRQ3 303 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 TRIM51Q9BSJ1 452 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ZMYND15Q9H091 742 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 ASB8Q9H765 288 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 RMI1Q9H9A7 625 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 SPATS2LQ9NUQ6 558 aaKnown RBP9.99□□□□□ -0.81
VPS28-204ENST00000526054 TRNAU1APQ9NX07 287 aaKnown RBP9.99□□□□□ -0.81
VPS28-204ENST00000526054 TAAR2Q9P1P5 351 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 CRLS1Q9UJA2 301 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 RIMKLBQ9ULI2 386 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 CNOT6Q9ULM6 557 aaKnown RBP9.99□□□□□ -0.81
VPS28-204ENST00000526054 SUFUQ9UMX1 484 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 PCDHGA4Q9Y5G9 962 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 HEMK1Q9Y5R4 338 aaPredicted RBP9.99□□□□□ -0.81
VPS28-204ENST00000526054 MRFAP1Q9Y605 127 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 SLC30A1Q9Y6M5 507 aa9.99□□□□□ -0.81
VPS28-204ENST00000526054 PIEZO2Q9H5I5 2752 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 SDK2Q58EX2 2172 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 CCDC78A2IDD5 438 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 EFCAB8A8MWE9 144 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 GPR89AB7ZAQ6 455 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 C9orf172C9J069 976 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 GOLGA8MH3BSY2 632 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 HGSO14964 777 aaPredicted RBP9.98□□□□□ -0.81
VPS28-204ENST00000526054 VEGFDO43915 354 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 GPR89BP0CG08 455 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 MGAT1P26572 445 aa9.98□□□□□ -0.81
VPS28-204ENST00000526054 AK4P27144 223 aaPredicted RBP9.98□□□□□ -0.81
VPS28-204ENST00000526054 MC4RP32245 332 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms