RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CEBPZQ03701 1054 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 FRG1Q14331 258 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 FGFBP1Q14512 234 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SUPT20HL1Q3ZLR7 823 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 ZNF628Q5EBL2 1059 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 GLRA4Q5JXX5 417 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 KRT80Q6KB66 452 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 PLPPR4Q7Z2D5 763 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 PRIMA1Q86XR5 153 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 DHX40Q8IX18 779 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 FAM217AQ8IXS0 508 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 PEX5LQ8IYB4 626 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 MRPL43Q8N983 215 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 ZBTB8BQ8NAP8 495 aaPredicted RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 KCNH5Q8NCM2 988 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SLC44A5Q8NCS7 719 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 CNNM3Q8NE01 707 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 OR6J1Q8NGC5 347 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 RASSF8Q8NHQ8 419 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 TEKT1Q969V4 418 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 RNF183Q96D59 192 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 GIMAP5Q96F15 307 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 ZNF419Q96HQ0 510 aaPredicted RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 PGAM5Q96HS1 289 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 FER1L6-AS2Q96M78 137 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 CMTM3Q96MX0 182 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 MAK16Q9BXY0 300 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 ACPTQ9BZG2 426 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SMARCAD1Q9H4L7 1026 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 RIOX1Q9H6W3 641 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 TM9SF3Q9HD45 589 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 DDX4Q9NQI0 724 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 SERINC1Q9NRX5 453 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 THSD1Q9NS62 852 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SLC6A13Q9NSD5 602 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 DDX18Q9NVP1 670 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 CHCHD3Q9NX63 227 aaKnown RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 AATFQ9NY61 560 aaKnown RBP eCLIP4.77□□□□□ -1.65
CD44-220ENST00000525688 PLEKHB1Q9UF11 243 aaPredicted RBP4.77□□□□□ -1.65
CD44-220ENST00000525688 IL19Q9UHD0 177 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 SESN1Q9Y6P5 492 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 OVOS2A0A0J9YW53 1432 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 OVOS2Q6IE36 1432 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 GLI3P10071 1580 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 NSD2O96028 1365 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 NFAT5O94916 1531 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 MYOM1P52179 1685 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 LMO7Q8WWI1 1683 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 CAMTA1Q9Y6Y1 1673 aa4.77□□□□□ -1.65
CD44-220ENST00000525688 ARPC4-TTLL3A0A0A6YYG9 625 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 A0A0U1RQF3 1178 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 LRRD1A4D1F6 860 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 ZSCAN5CA6NGD5 496 aaPredicted RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 KLRF2D3W0D1 207 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 IFNL4K9M1U5 179 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 DNM1LO00429 736 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 ZNF263O14978 683 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 TLR2O60603 784 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 DDHD2O94830 711 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 FSHBP01225 129 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 MYBL1P10243 752 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 ENO3P13929 434 aaPredicted RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 TYMPP19971 482 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 PTAFRP25105 342 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 IL15P40933 162 aaPredicted RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 MTIF2P46199 727 aaKnown RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 CXCR3P49682 368 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 LUMP51884 338 aaPredicted RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 POLGP54098 1239 aaPredicted RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 GMFBP60983 142 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 ID2Q02363 134 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 RALGDSQ12967 914 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 CAMK2DQ13557 499 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 ITGA7Q13683 1181 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 IRF3Q14653 427 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 SMTNL2Q2TAL5 461 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 CCDC40Q4G0X9 1142 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 BOLA3Q53S33 107 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 HSP90AA5PQ58FG0 334 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 JADE1Q6IE81 842 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 TSSK4Q6SA08 328 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 OTOAQ7RTW8 1153 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 TICAM1Q8IUC6 712 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 WDR63Q8IWG1 891 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 LRRC43Q8N309 656 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 SLC16A11Q8NCK7 471 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 SGCDQ92629 289 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 MR1Q95460 341 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 EME1Q96AY2 570 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 SLC22A18Q96BI1 424 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 TUBGCP3Q96CW5 907 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 MSI2Q96DH6 328 aaKnown RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 PABPC5Q96DU9 382 aaKnown RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 RBM14Q96PK6 669 aaKnown RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 BBS4Q96RK4 519 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 ABHD1Q96SE0 405 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 KLHL4Q9C0H6 718 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 B3GNT4Q9C0J1 378 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 CDT1Q9H211 546 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 ST6GALNAC4Q9H4F1 302 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms