RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 LIX1Q8N485 282 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 ZBTB2Q8N680 514 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 PHF10Q8WUB8 498 aaKnown RBP11.57□□□□□ -0.56
SYNPO-204ENST00000519664 ADI1Q9BV57 179 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 ERVK-6Q9BXR3 956 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 CEP44Q9C0F1 390 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 NUAK2Q9H093 628 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 RAD21L1Q9H4I0 556 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 LIN28AQ9H9Z2 209 aaKnown RBP11.57□□□□□ -0.56
SYNPO-204ENST00000519664 SMPD3Q9NY59 655 aaPredicted RBP11.57□□□□□ -0.56
SYNPO-204ENST00000519664 KIAA1522Q9P206 1035 aaPredicted RBP11.57□□□□□ -0.56
SYNPO-204ENST00000519664 IKZF3Q9UKT9 509 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 NENFQ9UMX5 172 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 TMED5Q9Y3A6 229 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 BRWD1Q9NSI6 2320 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 T-ENOLP0DO92 83 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 DIO3P55073 304 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 TRAF3Q13114 568 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 NCF4Q15080 339 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 CYP2A13Q16696 494 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 PDCD4Q53EL6 469 aaKnown RBP11.57□□□□□ -0.56
SYNPO-204ENST00000519664 NCCRP1Q6ZVX7 275 aaPredicted RBP11.57□□□□□ -0.56
SYNPO-204ENST00000519664 SPATA19Q7Z5L4 167 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 CEP97Q8IW35 865 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 EEF1AKMT1Q8WVE0 214 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 OMA1Q96E52 524 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 MAGEL2Q9UJ55 1249 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 KLHL20Q9Y2M5 609 aa11.57□□□□□ -0.56
SYNPO-204ENST00000519664 ELOVL7A1L3X0 281 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 POU2F1P14859 743 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CACNG1Q06432 222 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 C1DQ13901 141 aaKnown RBP11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CARTPTQ16568 116 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 MS4A13Q5J8X5 152 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CGB2Q6NT52 195 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 DPY19L2P1Q6NXN4 242 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 OR10T2Q8NGX3 314 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 PSMA8Q8TAA3 256 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CENPNQ96H22 339 aaPredicted RBP11.56□□□□□ -0.56
SYNPO-204ENST00000519664 ITCHQ96J02 903 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 NSUN5Q96P11 429 aaKnown RBP11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CXorf21Q9HAI6 301 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 SGK2Q9HBY8 427 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 UBR2Q8IWV8 1755 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 TRBV23OR9-2A0A075B6M9 112 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 PTGESO14684 152 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 ADH1AP07327 375 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 MYCLP1P12525 358 aaPredicted RBP11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CCND3P30281 292 aaPredicted RBP11.56□□□□□ -0.56
SYNPO-204ENST00000519664 HCAR3P49019 387 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 MAPKAPK2P49137 400 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CERS6Q6ZMG9 384 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 SVOPQ8N4V2 548 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 ASZ1Q8WWH4 475 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 ADAMTS10Q9H324 1103 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 RAPGEFL1Q9UHV5 662 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 ADAMTS5Q9UNA0 930 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 LYVE1Q9Y5Y7 322 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 AURKAO14965 403 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 XYLBO75191 536 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 PROZP22891 400 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 IL4RP24394 825 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 PRDX6P30041 224 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 AGTR2P50052 363 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CCR3P51677 355 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 PAGE2BQ5JRK9 111 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CCDC149Q6ZUS6 474 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 OOSP2Q86WS3 158 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CHPFQ8IZ52 775 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 FUBP3Q96I24 572 aaKnown RBP eCLIP11.56□□□□□ -0.56
SYNPO-204ENST00000519664 BTBD9Q96Q07 612 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 RAB26Q9ULW5 256 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 GTF2A1LQ9UNN4 478 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 CHD4Q14839 1912 aa11.56□□□□□ -0.56
SYNPO-204ENST00000519664 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SYN3O14994 580 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 MFN2O95140 757 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 CLDN9O95484 217 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 NADKO95544 446 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 JAK1P23458 1154 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SPAM1P38567 509 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 COL9A2Q14055 689 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 DGUOKQ16854 277 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SPANXN2Q5MJ10 180 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 TIFABQ6ZNK6 161 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 MAPK15Q8TD08 544 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 CAPSLQ8WWF8 208 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 CLP1Q92989 425 aaKnown RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 NLNQ9BYT8 704 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ABCB8Q9NUT2 735 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SPATA7Q9P0W8 599 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 GPC6Q9Y625 555 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 TRPM3Q9HCF6 1732 aaPredicted RBP11.55□□□□□ -0.56
SYNPO-204ENST00000519664 A0A1W2PRU2 124 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 MYADML2A6NDP7 307 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 TAF4O00268 1085 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 TOR1BO14657 336 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 ALDH1A2O94788 518 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 SEC24AO95486 1093 aa11.55□□□□□ -0.56
SYNPO-204ENST00000519664 NOS3P29474 1203 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms