RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CMPK2Q5EBM0 449 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ALG10BQ5I7T1 473 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 RASGEF1AQ8N9B8 481 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CD300LFQ8TDQ1 290 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 UXTQ9UBK9 157 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 PACSIN3Q9UKS6 424 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 TARBP1Q13395 1621 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ABHD14A-ACY1A0A1B0GW23 586 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 RGL2O15211 777 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CYP17A1P05093 508 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 SUPT20HL2P0C7V6 817 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CDKN2CP42773 168 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 RGS19P49795 217 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 SLC13A2Q13183 592 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 SEC23BQ15437 767 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 TRAM1Q15629 374 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 SLC9B1Q4ZJI4 515 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 XKR6Q5GH73 641 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 GTF2IRD2BQ6EKJ0 949 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 GK5Q6ZS86 529 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 BRINP3Q76B58 766 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 GTF2IRD2Q86UP8 949 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ATAD1Q8NBU5 361 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 KXD1Q9BQD3 176 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 C2orf49Q9BVC5 232 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 NUDT4Q9NZJ9 180 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 GAKO14976 1311 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 H0Y858 1186 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 KRT33AO76009 404 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 B3GAT3O94766 335 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 INMTO95050 263 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CYP3A4P08684 503 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CYP3A5P20815 502 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 CD247P20963 164 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 PSMB4P28070 264 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 EPHB3P54753 998 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 TBRG1Q3YBR2 411 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 FBXO33Q7Z6M2 555 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 GALNT5Q7Z7M9 940 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 EPS8L1Q8TE68 723 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 PIGKQ92643 395 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 PPP1R16AQ96I34 528 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 C12orf65Q9H3J6 166 aaKnown RBP11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 ABCC13Q9NSE7 274 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 PCDHB5Q9Y5E4 795 aa11.12□□□□□ -0.63
LIMCH1-217ENST00000512946 MICAL2O94851 1124 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CRYZL1O95825 349 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 URODP06132 367 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 C2P06681 752 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 IL3P08700 152 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 LPOP22079 712 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 HTR7P34969 479 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 SSX2Q16385 188 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 EIPR1Q53HC9 387 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 ARSHQ5FYA8 562 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 ELMO3Q96BJ8 720 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 LENG8Q96PV6 779 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CCDC32Q9BV29 185 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 ATP13A3Q9H7F0 1226 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 EVA1BQ9NVM1 165 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 NARFQ9UHQ1 456 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CMAHPQ9Y471 501 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 ARL5CA6NH57 179 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 NME6O75414 186 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 LYPLA1O75608 230 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 THP07101 528 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 DNAJA1P31689 397 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 E2F1Q01094 437 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 RPL6Q02878 288 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 PTP4A2Q12974 167 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 LCP2Q13094 533 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 TMEM119Q4V9L6 283 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 SETMARQ53H47 684 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 ACSBG2Q5FVE4 666 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 RNASE12Q5GAN4 147 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CERS6Q6ZMG9 384 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 MFSD8Q8NHS3 518 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 STON2Q8WXE9 905 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 NCSTNQ92542 709 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 TMEM169Q96HH4 297 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CPB2Q96IY4 423 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 GLT1D1Q96MS3 346 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 LRRC3Q9BY71 257 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 AGXT2Q9BYV1 514 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CYTH4Q9UIA0 394 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 U3KQV3 271 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 DAPL1A0PJW8 107 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 A8MUI8 341 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 PRKYO43930 277 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 GNRH1P01148 92 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CKMP06732 381 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 LINC00032P0C843 101 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 SAGP10523 405 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CD40LGP29965 261 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 RGS8P57771 180 aaPredicted RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 MXD1Q05195 221 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 MAMLD1Q13495 774 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CTC1Q2NKJ3 1217 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 SP8Q8IXZ3 490 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 DEFB106AQ8N104 65 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms