RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 CASC4Q6P4E1 433 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 ZNF449Q6P9G9 518 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 ABRAXAS1Q6UWZ7 409 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 MPP5Q8N3R9 675 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 OR2L2Q8NH16 312 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 OR10G6Q8NH81 332 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 CXorf40BQ96DE9 158 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 KIFC1Q9BW19 673 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 CCDC86Q9H6F5 360 aaKnown RBP16.39■□□□□ 0.21
SNCA-209ENST00000506244 UCK1Q9HA47 277 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 CHRAC1Q9NRG0 131 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 CATSPERZQ9NTU4 200 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 SYBUQ9NX95 663 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 SLC2A6Q9UGQ3 507 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 ACSL5Q9ULC5 683 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 SOX13Q9UN79 622 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 TPRP12270 2363 aaKnown RBP16.39■□□□□ 0.21
SNCA-209ENST00000506244 CHD8Q9HCK8 2581 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 KNTC1P50748 2209 aa16.39■□□□□ 0.21
SNCA-209ENST00000506244 C17orf113A0A1B0GUU1 675 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 TRABD2BA6NFA1 517 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 LILRA5A6NI73 299 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 NDC80O14777 642 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 PPM1DO15297 605 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 VIPP01282 170 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 XRCC1P18887 633 aaPredicted RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 RPL10P27635 214 aaKnown RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 PPM1FP49593 454 aaPredicted RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 TTPAP49638 278 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 INHBCP55103 352 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 UBE2IP63279 158 aaKnown RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 CRADDP78560 199 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 EIF3IQ13347 325 aaKnown RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 DHX34Q14147 1143 aaKnown RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 AMZ1Q400G9 498 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 ANKRD22Q5VYY1 191 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 PIM3Q86V86 326 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 HOOK3Q86VS8 718 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 MARCH9Q86YJ5 346 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 KLHL7Q8IXQ5 586 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 PIANPQ8IYJ0 282 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 C17orf53Q8N3J3 647 aaPredicted RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 ZCCHC14Q8WYQ9 949 aaKnown RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 LIN37Q96GY3 246 aaPredicted RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 AHCYL2Q96HN2 611 aaKnown RBP16.38■□□□□ 0.21
SNCA-209ENST00000506244 ZNF778Q96MU6 729 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 SERPINB12Q96P63 405 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 TSSK1BQ9BXA7 367 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 TREX1Q9NSU2 369 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 DKK4Q9UBT3 224 aa16.38■□□□□ 0.21
SNCA-209ENST00000506244 COL27A1Q8IZC6 1860 aaPredicted RBP16.37■□□□□ 0.21
SNCA-209ENST00000506244 TRBV23OR9-2A0A075B6M9 112 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 IGHV1OR21-1A0A087WYE8 117 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 MAGEB16A2A368 324 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 OR51F1A6NGY5 319 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 SMAPO00193 183 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 DNALI1O14645 258 aaPredicted RBP16.37■□□□□ 0.21
SNCA-209ENST00000506244 PFDN6O15212 129 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 FANCGO15287 622 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 FTH1P02794 183 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 SLC35G4P0C7Q5 338 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 OR56A5P0C7T3 313 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 CCKBRP32239 447 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 CDKN1CP49918 316 aaPredicted RBP16.37■□□□□ 0.21
SNCA-209ENST00000506244 DRG2P55039 364 aaKnown RBP16.37■□□□□ 0.21
SNCA-209ENST00000506244 OR1D5P58170 312 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 NFE2L1Q14494 772 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 RTP5Q14D33 572 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 METRNLQ641Q3 311 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 SYT10Q6XYQ8 523 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 NAT8LQ8N9F0 302 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 TRIM44Q96DX7 344 aaPredicted RBP16.37■□□□□ 0.21
SNCA-209ENST00000506244 CCM2Q9BSQ5 444 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 PCDHB1Q9Y5F3 818 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 ENTPD2Q9Y5L3 495 aa16.37■□□□□ 0.21
SNCA-209ENST00000506244 BPTFQ12830 3046 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 CCDC187A0A096LP49 1063 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 SDR42E2A6NKP2 422 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 GOLGA8MH3BSY2 632 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 SGTAO43765 313 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 PRSS56P0CW18 603 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 PDX1P52945 283 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 SQSTM1Q13501 440 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 RNASEH2BQ5TBB1 312 aaKnown RBP16.36■□□□□ 0.21
SNCA-209ENST00000506244 KIAA0930Q6ICG6 404 aaPredicted RBP16.36■□□□□ 0.21
SNCA-209ENST00000506244 MRNIPQ6NTE8 343 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 CAND1Q86VP6 1230 aaKnown RBP16.36■□□□□ 0.21
SNCA-209ENST00000506244 JAMLQ86YT9 394 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 LSMEM2Q8N112 164 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 OTUD6BQ8N6M0 293 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 KDF1Q8NAX2 398 aaPredicted RBP16.36■□□□□ 0.21
SNCA-209ENST00000506244 WDR36Q8NI36 951 aaKnown RBP16.36■□□□□ 0.21
SNCA-209ENST00000506244 TMEM159Q96B96 161 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 ATXN7L3BQ96GX2 97 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 POLR1BQ9H9Y6 1135 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 EPB41L5Q9HCM4 733 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 AKAP7Q9P0M2 348 aaPredicted RBP16.36■□□□□ 0.21
SNCA-209ENST00000506244 SCHIP1Q9P0W5 487 aaPredicted RBP16.36■□□□□ 0.21
SNCA-209ENST00000506244 FAM8A1Q9UBU6 413 aa16.36■□□□□ 0.21
SNCA-209ENST00000506244 AK5Q9Y6K8 562 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms