RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 NUDT4Q9NZJ9 180 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 C15orf38-AP3S2A0A0A6YYH1 394 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 LEFTY1O75610 366 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 CLDN9O95484 217 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 DLDP09622 509 aaKnown RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 EN2P19622 333 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 SLC6A4P31645 630 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 PCLAFQ15004 111 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 METTL21CQ5VZV1 264 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 ARPINQ7Z6K5 226 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 ANKRD46Q86W74 232 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 C17orf64Q86WR6 236 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 SMIM14Q96QK8 99 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 KXD1Q9BQD3 176 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 NME7Q9Y5B8 376 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 ANKRD12Q6UB98 2062 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 SBF2Q86WG5 1849 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 FAM155AB1AL88 458 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 RFXANKO14593 260 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 AURKAO14965 403 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 MRPS35P82673 323 aaKnown RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 HMGCS1Q01581 520 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 NET1Q7Z628 596 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 C2CD4AQ8NCU7 369 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 IMPAD1Q9NX62 359 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 TRIM38O00635 465 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 DEAF1O75398 565 aaPredicted RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 ALDH6A1Q02252 535 aaKnown RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 LRRC26Q2I0M4 334 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 GPR33Q49SQ1 333 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 CEP97Q8IW35 865 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 TCEAL8Q8IYN2 117 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 MYLIPQ8WY64 445 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 RTP4Q96DX8 246 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 CADM1Q9BY67 442 aaKnown RBP13.92□□□□□ -0.18
TCOF1-207ENST00000504761 GIMAP2Q9UG22 337 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 ERVW-1Q9UQF0 538 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 COQ6Q9Y2Z9 468 aa13.92□□□□□ -0.18
TCOF1-207ENST00000504761 RASGRP1O95267 797 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 MT-ND1P03886 318 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 ASLP04424 464 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 GSTM1P09488 218 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 HNF1BP35680 557 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 LACTB2Q53H82 288 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-207ENST00000504761 DHDDSQ86SQ9 333 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 ARHGAP12Q8IWW6 846 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 TOX2Q96NM4 488 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 TFB2MQ9H5Q4 396 aaKnown RBP13.91□□□□□ -0.18
TCOF1-207ENST00000504761 WNK3Q9BYP7 1800 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 SGTAO43765 313 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 IMPDH1P20839 514 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 HK2P52789 917 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 SLC8B1Q6J4K2 584 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 BRAT1Q6PJG6 821 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 WFIKKN2Q8TEU8 576 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 BDH2Q9BUT1 245 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 EBPLQ9BY08 206 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 NSUN3Q9H649 340 aaKnown RBP13.91□□□□□ -0.18
TCOF1-207ENST00000504761 MARCH5Q9NX47 278 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 ZDHHC3Q9NYG2 299 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 SNUPNO95149 360 aaKnown RBP13.91□□□□□ -0.18
TCOF1-207ENST00000504761 AQP1P29972 269 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 HERVK_113P63132 956 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 RANBP10Q6VN20 620 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 UBE2E3Q969T4 207 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 TCEAL4Q96EI5 215 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 PLEKHA8Q96JA3 519 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 RTKNQ9BST9 563 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 ERVK-6Q9BXR3 956 aa13.91□□□□□ -0.18
TCOF1-207ENST00000504761 NPHS1O60500 1241 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 GJB3O75712 270 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 PGLSO95336 258 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 UROSP10746 265 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 TNNI3P19429 210 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 DDX6P26196 483 aaKnown RBP eCLIP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 RPL10P27635 214 aaKnown RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 SH3BGRP55822 239 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 ZNF789Q5FWF6 425 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 PSAPL1Q6NUJ1 521 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 CPSF7Q8N684 471 aaKnown RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 SLC22A12Q96S37 553 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 TDRD1Q9BXT4 1180 aaKnown RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 ELOVL2Q9NXB9 296 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 ANAPC2Q9UJX6 822 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 SMAD6O43541 496 aaKnown RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 ANPEPP15144 967 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 CXCR2P25025 360 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 SLC18A1P54219 525 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 ZCCHC8Q6NZY4 707 aaKnown RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 HOMEZQ8IX15 550 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 TXNDC5Q8NBS9 432 aaKnown RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 HMGB4Q8WW32 186 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 AHCYL2Q96HN2 611 aaKnown RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 DACH2Q96NX9 599 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 KCNA7Q96RP8 456 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 ZNF184Q99676 751 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-207ENST00000504761 CCDC28BQ9BUN5 200 aa13.9□□□□□ -0.18
TCOF1-207ENST00000504761 SELENONQ9NZV5 590 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms