RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 PSMD13Q9UNM6 376 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 ZNF451Q9Y4E5 1061 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 SPO11Q9Y5K1 396 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 GTF3C3Q9Y5Q9 886 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 LRBAP50851 2863 aa14.38□□□□□ -0.11
TRAF4-212ENST00000498540 TLCD2A6NGC4 264 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 ENO4A6NNW6 628 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 DDAH2O95865 285 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 SPTBP11277 2137 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 VCLP18206 1134 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 LPOP22079 712 aaPredicted RBP14.37□□□□□ -0.11
TRAF4-212ENST00000498540 ARL4DP49703 201 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 TUBB4BP68371 445 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 PDE1BQ01064 536 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 TUBB2AQ13885 445 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 PLCL1Q15111 1095 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 PDK2Q15119 407 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 RPE65Q16518 533 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 DNTTIP2Q5QJE6 756 aaKnown RBP14.37□□□□□ -0.11
TRAF4-212ENST00000498540 PRAMEF17Q5VTA0 474 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 IZUMO3Q5VZ72 239 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 SLC6A19Q695T7 634 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 LCN10Q6JVE6 187 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 FAM83HQ6ZRV2 1179 aaPredicted RBP14.37□□□□□ -0.11
TRAF4-212ENST00000498540 MAMDC2Q7Z304 686 aaPredicted RBP14.37□□□□□ -0.11
TRAF4-212ENST00000498540 KMT5CQ86Y97 462 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 TMEM126BQ8IUX1 230 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 D2HGDHQ8N465 521 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 TTC30BQ8N4P2 665 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 FDCSPQ8NFU4 85 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 GDAP1Q8TB36 358 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 PRR7Q8TB68 274 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 ZNF501Q96CX3 271 aaPredicted RBP14.37□□□□□ -0.11
TRAF4-212ENST00000498540 TCTN2Q96GX1 697 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 TUBB2BQ9BVA1 445 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 NUDT9Q9BW91 350 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 CHST8Q9H2A9 424 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 MAP10Q9P2G4 905 aa14.37□□□□□ -0.11
TRAF4-212ENST00000498540 TEP1Q99973 2627 aaKnown RBP14.37□□□□□ -0.11
TRAF4-212ENST00000498540 A0A087X0T9 212 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 UBA6A0AVT1 1052 aaPredicted RBP14.36□□□□□ -0.11
TRAF4-212ENST00000498540 OR5K3A6NET4 321 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 GPR39O43194 453 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 DPM1O60762 260 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 TMEM63AO94886 807 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 MT-CYBP00156 380 aaPredicted RBP14.36□□□□□ -0.11
TRAF4-212ENST00000498540 FAM228BP0C875 321 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 DCTP40126 519 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 CTSCP53634 463 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 HSD11B2P80365 405 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 CDK18Q07002 472 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 DMPKQ09013 629 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 GTF2H3Q13889 308 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 KLHL35Q6PF15 583 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 CLEC17AQ6ZS10 378 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 NT5DC3Q86UY8 548 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 AMZ2Q86W34 360 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 PLD5Q8N7P1 536 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 RBMXL3Q8N7X1 1067 aaKnown RBP14.36□□□□□ -0.11
TRAF4-212ENST00000498540 ENDOVQ8N8Q3 282 aaKnown RBP14.36□□□□□ -0.11
TRAF4-212ENST00000498540 SPATA22Q8NHS9 363 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 TADA1Q96BN2 335 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 C19orf60Q96EN9 201 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 PPM1MQ96MI6 270 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 ZNF830Q96NB3 372 aaPredicted RBP14.36□□□□□ -0.11
TRAF4-212ENST00000498540 NAP1L5Q96NT1 182 aaPredicted RBP14.36□□□□□ -0.11
TRAF4-212ENST00000498540 AGAP3Q96P47 875 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 CD180Q99467 661 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 SLC29A3Q9BZD2 475 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 SLAMF7Q9NQ25 335 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 ERRFI1Q9UJM3 462 aaPredicted RBP14.36□□□□□ -0.11
TRAF4-212ENST00000498540 SNX7Q9UNH6 387 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 PCDHGB7Q9Y5F8 929 aa14.36□□□□□ -0.11
TRAF4-212ENST00000498540 CFAP20Q9Y6A4 193 aaKnown RBP14.36□□□□□ -0.11
TRAF4-212ENST00000498540 A0A1B0GTH6 734 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 A6NL46 340 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 ZNF185O15231 689 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 DDX3YO15523 660 aaKnown RBP14.35□□□□□ -0.11
TRAF4-212ENST00000498540 KRT86O43790 486 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 CA5AP35218 305 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 ITGA1P56199 1179 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 TYRO3Q06418 890 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 AP1B1Q10567 949 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 ABRQ12979 859 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 NFE2L1Q14494 772 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 FILIP1LQ4L180 1135 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 DUS1LQ6P1R4 473 aaKnown RBP14.35□□□□□ -0.11
TRAF4-212ENST00000498540 FBXO38Q6PIJ6 1188 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 MAP7D3Q8IWC1 876 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 RASGEF1AQ8N9B8 481 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 RAPGEF5Q92565 580 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 PNPLA2Q96AD5 504 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 RNF157Q96PX1 679 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 SLC25A51Q9H1U9 297 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 CBX8Q9HC52 389 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 KCND1Q9NSA2 647 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 IMP3Q9NV31 184 aaKnown RBP14.35□□□□□ -0.11
TRAF4-212ENST00000498540 HRASLS2Q9NWW9 162 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 HEY1Q9Y5J3 304 aa14.35□□□□□ -0.11
TRAF4-212ENST00000498540 ABCA12Q86UK0 2595 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms