RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 PCTPQ9UKL6 214 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 PTCH2Q9Y6C5 1203 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 J3KR12 359 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 MAN1A2O60476 641 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 NDST3O95803 873 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 CHRNA1P02708 482 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 MMP3P08254 477 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 SLC2A3P11169 496 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 SLC10A7Q0GE19 358 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 MAPRE1Q15691 268 aaKnown RBP15.18■□□□□ 0.02
SDF4-207ENST00000494748 TMEM236Q5W0B7 351 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 PGBD5Q8N414 524 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 GORASP2Q9H8Y8 452 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 RBMX2Q9Y388 322 aaKnown RBP15.18■□□□□ 0.02
SDF4-207ENST00000494748 PPP2R3BQ9Y5P8 575 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 GSSP48637 474 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 KIAA0040Q15053 153 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 HIST2H2ACQ16777 129 aaPredicted RBP15.18■□□□□ 0.02
SDF4-207ENST00000494748 FAM98BQ52LJ0 330 aaKnown RBP15.18■□□□□ 0.02
SDF4-207ENST00000494748 VARS2Q5ST30 1063 aaKnown RBP15.18■□□□□ 0.02
SDF4-207ENST00000494748 ABI1Q8IZP0 508 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 FRS2Q8WU20 508 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 AARSD1Q9BTE6 412 aaKnown RBP15.18■□□□□ 0.02
SDF4-207ENST00000494748 CATSPERBQ9H7T0 1116 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 NT5MQ9NPB1 228 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 DNAJB9Q9UBS3 223 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 PLXNA4Q9HCM2 1894 aa15.18■□□□□ 0.02
SDF4-207ENST00000494748 LOC285095A0A1B0GVY8 99 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 MEIS3P2A8K0S8 358 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 ARNTLO00327 626 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 ENPP3O14638 875 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 MYO1DO94832 1006 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 ALDH4A1P30038 563 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 ARRDC2Q8TBH0 407 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 PHF10Q8WUB8 498 aaKnown RBP15.17■□□□□ 0.02
SDF4-207ENST00000494748 FUBP1Q96AE4 644 aaKnown RBP15.17■□□□□ 0.02
SDF4-207ENST00000494748 SMARCD1Q96GM5 515 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 KLHL5Q96PQ7 755 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 SLIRPQ9GZT3 109 aaKnown RBP15.17■□□□□ 0.02
SDF4-207ENST00000494748 IKZF5Q9H5V7 419 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 RMND5AQ9H871 391 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 TMEM45AQ9NWC5 275 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 INTS6Q9UL03 887 aaKnown RBP15.17■□□□□ 0.02
SDF4-207ENST00000494748 ERVK-11Q9UQG0 969 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 LOC100130705A0A1B0GUX0 176 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 A8MU76 341 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 M0QX08 132 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 UROSP10746 265 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 AFF1P51825 1210 aaKnown RBP15.17■□□□□ 0.02
SDF4-207ENST00000494748 IFITM2Q01629 132 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 ZNF792Q3KQV3 632 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 NECAB2Q7Z6G3 386 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 FBXO39Q8N4B4 442 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 ZNF548Q8NEK5 533 aaPredicted RBP15.17■□□□□ 0.02
SDF4-207ENST00000494748 CNIH3Q8TBE1 160 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 CGREF1Q99674 301 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 RMI1Q9H9A7 625 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 NECTIN3Q9NQS3 549 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 SLCO3A1Q9UIG8 710 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 ARL5AQ9Y689 179 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 SUPT3HB4E1H0 165 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 E9PAM4 449 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 SLC22A1O15245 554 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 CD3EAPO15446 510 aaKnown RBP15.17■□□□□ 0.02
SDF4-207ENST00000494748 XPNPEP2O43895 674 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 CCR1P32246 355 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 HTR7P34969 479 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 MASP1P48740 699 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 FPGSQ05932 587 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 CDK5R2Q13319 367 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 PCBP1Q15365 356 aaKnown RBP eCLIP15.17■□□□□ 0.022e-10■■■■□ 22.9
SDF4-207ENST00000494748 SF3B4Q15427 424 aaKnown RBP eCLIP15.17■□□□□ 0.029e-8■■■■□ 19.7
SDF4-207ENST00000494748 TXNDC11Q6PKC3 985 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 SLC22A16Q86VW1 577 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 ZNF683Q8IZ20 524 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 SCAMP5Q8TAC9 235 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 GABPB2Q8TAK5 448 aaPredicted RBP15.17■□□□□ 0.02
SDF4-207ENST00000494748 CLSTN3Q9BQT9 956 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 DERL2Q9GZP9 239 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 HEBP1Q9NRV9 189 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 PIM2Q9P1W9 311 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 INVSQ9Y283 1065 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 HS3ST4Q9Y661 456 aa15.17■□□□□ 0.02
SDF4-207ENST00000494748 CDC7O00311 574 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 SLC16A6O15403 523 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 TBC1D4O60343 1298 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 HAPLN1P10915 354 aaPredicted RBP15.16■□□□□ 0.02
SDF4-207ENST00000494748 RYKP34925 604 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 HNRNPFP52597 415 aaKnown RBP15.16■□□□□ 0.02
SDF4-207ENST00000494748 VBP1P61758 197 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 CDC20Q12834 499 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 PPP1R8Q12972 351 aaKnown RBP15.16■□□□□ 0.02
SDF4-207ENST00000494748 TOP3AQ13472 1001 aaPredicted RBP15.16■□□□□ 0.02
SDF4-207ENST00000494748 TSNQ15631 228 aaKnown RBP15.16■□□□□ 0.02
SDF4-207ENST00000494748 PAGE2BQ5JRK9 111 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 BRMS1LQ5PSV4 323 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 PAQR3Q6TCH7 311 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 PRR23BQ6ZRT6 265 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 OR7A2PQ8NGA2 310 aa15.16■□□□□ 0.02
SDF4-207ENST00000494748 MYLPFQ96A32 169 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms