RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MYH4Q9Y623 1939 aa16.15■□□□□ 0.18
CCDC88B-209ENST00000494080 E7ESA3 106 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 FAM189A1O60320 539 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 TGFBIQ15582 683 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 MAPKAPK3Q16644 382 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 KIAA0408Q6ZU52 694 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 GALNT5Q7Z7M9 940 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 CAND1Q86VP6 1230 aaKnown RBP16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 KBTBD8Q8NFY9 601 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 STYXQ8WUJ0 223 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 AUTS2Q8WXX7 1259 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 TRIB2Q92519 343 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 SUSD6Q92537 303 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 FBXL20Q96IG2 436 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 TEX12Q9BXU0 123 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 MARCH7Q9H992 704 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 RASSF1Q9NS23 344 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 ZDHHC2Q9UIJ5 367 aa16.14■□□□□ 0.18
CCDC88B-209ENST00000494080 GLUD1P00367 558 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 MTHFD1P11586 935 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 IL10RBQ08334 325 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 CEACAM7Q14002 265 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 NECAB2Q7Z6G3 386 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 OR13C4Q8NGS5 318 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 REEP1Q9H902 201 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 OXSMQ9NWU1 459 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 MIOSQ9NXC5 875 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 TLR6Q9Y2C9 796 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 HS3ST4Q9Y661 456 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC22A3O75751 556 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 ANGPTL1O95841 491 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 DNASE1L3Q13609 305 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 ZNF605Q86T29 641 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 SYT12Q8IV01 421 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 TRIM48Q8IWZ4 208 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 BBS7Q8IWZ6 715 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 ZCCHC2Q9C0B9 1178 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 HECAQ9UBI9 543 aaPredicted RBP16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC22A2O15244 555 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 INSIG1O15503 277 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 IL1BP01584 269 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 TRAP1Q12931 704 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 ABRQ12979 859 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 UGT2A3Q6UWM9 527 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 RBFAQ8N0V3 343 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 OSBPL2Q9H1P3 480 aa16.14■□□□□ 0.17
CCDC88B-209ENST00000494080 TRIM64CA6NLI5 447 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 NDUFS2O75306 463 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 PRKCGP05129 697 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 ETV4P43268 484 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 RFX3P48380 749 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 CDH4P55283 916 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC10A2Q12908 348 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 HERC3Q15034 1050 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 ZNF423Q2M1K9 1284 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 ATXN7L2Q5T6C5 722 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 SERPINA13PQ6UXR4 307 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 KBTBD6Q86V97 674 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 KLHL32Q96NJ5 620 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC2A6Q9UGQ3 507 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 FKBPLQ9UIM3 349 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 PADI4Q9UM07 663 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 ARL5AQ9Y689 179 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 ADAMTS7Q9UKP4 1686 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 A0A1B0GUL6 1792 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 CCL16O15467 120 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 CLPXO76031 633 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 ACVRL1P37023 503 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC26A3P40879 764 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 MAGEA10P43363 369 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 ST13P5Q8NFI4 369 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 SUN5Q8TC36 379 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 OTUB1Q96FW1 271 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 NMUR1Q9HB89 426 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 KIAA1522Q9P206 1035 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 SUCOQ9UBS9 1254 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 MAGEL2Q9UJ55 1249 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 TBC1D30Q9Y2I9 924 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 SDK1Q7Z5N4 2213 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 H0Y858 1186 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 TLL1O43897 1013 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC25A14O95258 325 aaPredicted RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 TLE2Q04725 743 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 TIMM50Q3ZCQ8 353 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 GPRIN1Q7Z2K8 1008 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 FEM1AQ9BSK4 669 aa16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 MYO18AQ92614 2054 aaKnown RBP16.13■□□□□ 0.17
CCDC88B-209ENST00000494080 H3BNH8 94 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 RSL1D1O76021 490 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 TFAP2AP05549 437 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 CES1P23141 567 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 KRT20P35900 424 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 MAPKAPK2P49137 400 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 PAFAH1B3Q15102 231 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 PROSER1Q86XN7 944 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 OR2T12Q8NG77 320 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 OR9I1Q8NGQ6 314 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 ZBTB26Q9HCK0 441 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms