RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 ZCCHC23Q6ZST2 131 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 HEATR4Q86WZ0 1026 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 TSTD1Q8NFU3 115 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 KLK6Q92876 244 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 COX14Q96I36 57 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 LENG8Q96PV6 779 aaPredicted RBP21.33■■□□□ 1.01
SMC4-221ENST00000489573 PITPNM3Q9BZ71 974 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 BTBD1Q9H0C5 482 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 EPHX3Q9H6B9 360 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 TRIM39Q9HCM9 518 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 ITM2CQ9NQX7 267 aa21.33■■□□□ 1.01
SMC4-221ENST00000489573 NPEPPSL1A6NEC2 478 aa21.32■■□□□ 1
SMC4-221ENST00000489573 BTN3A1O00481 513 aa21.32■■□□□ 1
SMC4-221ENST00000489573 NDUFAB1O14561 156 aa21.32■■□□□ 1
SMC4-221ENST00000489573 EDF1O60869 148 aaKnown RBP21.32■■□□□ 1
SMC4-221ENST00000489573 KERAO60938 352 aa21.32■■□□□ 1
SMC4-221ENST00000489573 H2AFYO75367 372 aaKnown RBP21.32■■□□□ 1
SMC4-221ENST00000489573 CDK14O94921 469 aa21.32■■□□□ 1
SMC4-221ENST00000489573 CBSLP0DN79 551 aa21.32■■□□□ 1
SMC4-221ENST00000489573 GRK2P25098 689 aa21.32■■□□□ 1
SMC4-221ENST00000489573 AOAHP28039 575 aa21.32■■□□□ 1
SMC4-221ENST00000489573 CBSP35520 551 aa21.32■■□□□ 1
SMC4-221ENST00000489573 PRLHRP49683 370 aa21.32■■□□□ 1
SMC4-221ENST00000489573 CTSCP53634 463 aa21.32■■□□□ 1
SMC4-221ENST00000489573 PPP2CBP62714 309 aa21.32■■□□□ 1
SMC4-221ENST00000489573 PPP2CAP67775 309 aa21.32■■□□□ 1
SMC4-221ENST00000489573 STX3Q13277 289 aa21.32■■□□□ 1
SMC4-221ENST00000489573 GTF2H3Q13889 308 aa21.32■■□□□ 1
SMC4-221ENST00000489573 ACSBG2Q5FVE4 666 aa21.32■■□□□ 1
SMC4-221ENST00000489573 LIPMQ5VYY2 423 aa21.32■■□□□ 1
SMC4-221ENST00000489573 ADGRG6Q86SQ4 1221 aa21.32■■□□□ 1
SMC4-221ENST00000489573 MYO1HQ8N1T3 1032 aa21.32■■□□□ 1
SMC4-221ENST00000489573 STAG3L4Q8TBR4 150 aa21.32■■□□□ 1
SMC4-221ENST00000489573 ZNF473Q8WTR7 871 aaKnown RBP21.32■■□□□ 1
SMC4-221ENST00000489573 ASB12Q8WXK4 309 aa21.32■■□□□ 1
SMC4-221ENST00000489573 SGK2Q9HBY8 427 aa21.32■■□□□ 1
SMC4-221ENST00000489573 MBNL1Q9NR56 388 aaKnown RBP21.32■■□□□ 1
SMC4-221ENST00000489573 IKZF3Q9UKT9 509 aa21.32■■□□□ 1
SMC4-221ENST00000489573 LRRC72A6NJI9 287 aa21.31■■□□□ 1
SMC4-221ENST00000489573 CDC7O00311 574 aa21.31■■□□□ 1
SMC4-221ENST00000489573 KPNA5O15131 536 aa21.31■■□□□ 1
SMC4-221ENST00000489573 VEGFDO43915 354 aa21.31■■□□□ 1
SMC4-221ENST00000489573 ACSL1P33121 698 aa21.31■■□□□ 1
SMC4-221ENST00000489573 CDK3Q00526 305 aa21.31■■□□□ 1
SMC4-221ENST00000489573 ASPHQ12797 758 aa21.31■■□□□ 1
SMC4-221ENST00000489573 TSNQ15631 228 aaKnown RBP21.31■■□□□ 1
SMC4-221ENST00000489573 BCL7AQ4VC05 210 aa21.31■■□□□ 1
SMC4-221ENST00000489573 CES4AQ5XG92 561 aa21.31■■□□□ 1
SMC4-221ENST00000489573 ANO7Q6IWH7 933 aa21.31■■□□□ 1
SMC4-221ENST00000489573 PIWIL4Q7Z3Z4 852 aaKnown RBP21.31■■□□□ 1
SMC4-221ENST00000489573 TRIM69Q86WT6 500 aa21.31■■□□□ 1
SMC4-221ENST00000489573 OR2T34Q8NGX1 318 aa21.31■■□□□ 1
SMC4-221ENST00000489573 CCDC126Q96EE4 140 aa21.31■■□□□ 1
SMC4-221ENST00000489573 ATOH8Q96SQ7 321 aa21.31■■□□□ 1
SMC4-221ENST00000489573 OR2AG1Q9H205 316 aa21.31■■□□□ 1
SMC4-221ENST00000489573 C2orf42Q9NWW7 574 aa21.31■■□□□ 1
SMC4-221ENST00000489573 EBF1Q9UH73 591 aa21.31■■□□□ 1
SMC4-221ENST00000489573 RNF112Q9ULX5 631 aa21.31■■□□□ 1
SMC4-221ENST00000489573 TRPM6Q9BX84 2022 aa21.31■■□□□ 1
SMC4-221ENST00000489573 MUC3AQ02505 3323 aa21.31■■□□□ 1
SMC4-221ENST00000489573 EIF3FO00303 357 aaPredicted RBP21.31■■□□□ 1
SMC4-221ENST00000489573 IGLV3-19P01714 112 aa21.31■■□□□ 1
SMC4-221ENST00000489573 ENO3P13929 434 aaPredicted RBP21.31■■□□□ 1
SMC4-221ENST00000489573 MAT2AP31153 395 aaKnown RBP21.31■■□□□ 1
SMC4-221ENST00000489573 KCNC1P48547 511 aa21.31■■□□□ 1
SMC4-221ENST00000489573 PLEKHS1Q5SXH7 462 aa21.31■■□□□ 1
SMC4-221ENST00000489573 TMEM220Q6QAJ8 160 aa21.31■■□□□ 1
SMC4-221ENST00000489573 NAPRTQ6XQN6 538 aa21.31■■□□□ 1
SMC4-221ENST00000489573 BEND7Q8N7W2 519 aaPredicted RBP21.31■■□□□ 1
SMC4-221ENST00000489573 OR6Y1Q8NGX8 325 aa21.31■■□□□ 1
SMC4-221ENST00000489573 HHIPQ96QV1 700 aa21.31■■□□□ 1
SMC4-221ENST00000489573 WDR26Q9H7D7 661 aa21.31■■□□□ 1
SMC4-221ENST00000489573 ATXN10Q9UBB4 475 aa21.31■■□□□ 1
SMC4-221ENST00000489573 MUTYHQ9UIF7 546 aa21.31■■□□□ 1
SMC4-221ENST00000489573 TSR3Q9UJK0 312 aaKnown RBP21.31■■□□□ 1
SMC4-221ENST00000489573 SYCE1LA8MT33 242 aa21.3■■□□□ 1
SMC4-221ENST00000489573 A8MT66 165 aa21.3■■□□□ 1
SMC4-221ENST00000489573 SMIM24O75264 130 aa21.3■■□□□ 1
SMC4-221ENST00000489573 SNNO75324 88 aaPredicted RBP21.3■■□□□ 1
SMC4-221ENST00000489573 DNAJB13P59910 316 aa21.3■■□□□ 1
SMC4-221ENST00000489573 BOP1Q14137 746 aaKnown RBP21.3■■□□□ 1
SMC4-221ENST00000489573 GBX1Q14549 363 aa21.3■■□□□ 1
SMC4-221ENST00000489573 INPP5AQ14642 412 aa21.3■■□□□ 1
SMC4-221ENST00000489573 SLC22A9Q8IVM8 553 aa21.3■■□□□ 1
SMC4-221ENST00000489573 ELMO1Q92556 727 aa21.3■■□□□ 1
SMC4-221ENST00000489573 EXT2Q93063 718 aa21.3■■□□□ 1
SMC4-221ENST00000489573 GRAMD1AQ96CP6 724 aa21.3■■□□□ 1
SMC4-221ENST00000489573 ZNF514Q96K75 400 aaPredicted RBP21.3■■□□□ 1
SMC4-221ENST00000489573 CCM2Q9BSQ5 444 aa21.3■■□□□ 1
SMC4-221ENST00000489573 TEX101Q9BY14 249 aa21.3■■□□□ 1
SMC4-221ENST00000489573 CUL9Q8IWT3 2517 aa21.29■■□□□ 1
SMC4-221ENST00000489573 NEMP2A6NFY4 417 aa21.29■■□□□ 1
SMC4-221ENST00000489573 RAD51BO15315 384 aa21.29■■□□□ 1
SMC4-221ENST00000489573 TPBGLP0DKB5 382 aa21.29■■□□□ 1
SMC4-221ENST00000489573 IGFALSP35858 605 aa21.29■■□□□ 1
SMC4-221ENST00000489573 TRIM23P36406 574 aa21.29■■□□□ 1
SMC4-221ENST00000489573 NFKB2Q00653 900 aa21.29■■□□□ 1
SMC4-221ENST00000489573 OCRLQ01968 901 aa21.29■■□□□ 1
SMC4-221ENST00000489573 TMEM31Q5JXX7 168 aa21.29■■□□□ 1
SMC4-221ENST00000489573 ADAMTSL2Q86TH1 951 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms