RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 BMP10O95393 424 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 COX7A2P14406 83 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 GSCP56915 257 aaPredicted RBP2.63□□□□□ -1.99
SMC4-220ENST00000488017 NFATC2Q13469 925 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 DRP2Q13474 957 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 TRIM14Q14142 442 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 CAPRIN1Q14444 709 aaKnown RBP2.63□□□□□ -1.99
SMC4-220ENST00000488017 NOL8Q76FK4 1167 aaKnown RBP2.63□□□□□ -1.99
SMC4-220ENST00000488017 PTOV1Q86YD1 416 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 TICAM1Q8IUC6 712 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 GPALPP1Q8IXQ4 340 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 RAB42Q8N4Z0 105 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 POM121L12Q8N7R1 296 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 C17orf47Q8NEP4 570 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 MPHOSPH6Q99547 160 aaKnown RBP2.63□□□□□ -1.99
SMC4-220ENST00000488017 TTYH1Q9H313 450 aaPredicted RBP2.63□□□□□ -1.99
SMC4-220ENST00000488017 MAGIXQ9H6Y5 334 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 NUDT4Q9NZJ9 180 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 STK39Q9UEW8 545 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 CNOT7Q9UIV1 285 aaKnown RBP2.63□□□□□ -1.99
SMC4-220ENST00000488017 TUBE1Q9UJT0 475 aa2.63□□□□□ -1.99
SMC4-220ENST00000488017 COL16A1Q07092 1604 aaPredicted RBP2.63□□□□□ -1.99
SMC4-220ENST00000488017 IGLV9-49A0A0B4J1Y8 123 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 NXPH2O95156 264 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 PRB2P02812 416 aaPredicted RBP2.62□□□□□ -1.99
SMC4-220ENST00000488017 ZSCAN5DPP0CG00 497 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 RBMS1P29558 406 aaKnown RBP2.62□□□□□ -1.99
SMC4-220ENST00000488017 CHKAP35790 457 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 UFM1P61960 85 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 PDE1CQ14123 709 aaPredicted RBP2.62□□□□□ -1.99
SMC4-220ENST00000488017 FGFBP1Q14512 234 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 NFIL3Q16649 462 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 HIGD2BQ4VC39 106 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 WLSQ5T9L3 541 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 MAP3K21Q5TCX8 1036 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 SEL1L3Q68CR1 1132 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 CCDC174Q6PII3 467 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 SLC5A8Q8N695 610 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 SLC38A9Q8NBW4 561 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 OR2T11Q8NH01 316 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 SUSD6Q92537 303 aa2.62□□□□□ -1.99
SMC4-220ENST00000488017 RRNAD1Q96FB5 475 aaKnown RBP2.62□□□□□ -1.99
SMC4-220ENST00000488017 SLC25A10Q9UBX3 287 aaPredicted RBP2.62□□□□□ -1.99
SMC4-220ENST00000488017 PSMC2P35998 433 aaKnown RBP2.61□□□□□ -1.99
SMC4-220ENST00000488017 GRK6P43250 576 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 HLCSP50747 726 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 GPR17Q13304 367 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 OS9Q13438 667 aaPredicted RBP2.61□□□□□ -1.99
SMC4-220ENST00000488017 SLC12A1Q13621 1099 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 COL28A1Q2UY09 1125 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 HLA-BQ31612 363 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 C15orf32Q32M92 178 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 DMKNQ6E0U4 476 aaPredicted RBP2.61□□□□□ -1.99
SMC4-220ENST00000488017 SLC22A25Q6T423 547 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 BBS12Q6ZW61 710 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 LRRC8DQ7L1W4 858 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 CCDC13Q8IYE1 715 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 ZNF843Q8N446 348 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 MYCT1Q8N699 235 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 GCSAMQ8N6F7 178 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 C1orf52Q8N6N3 182 aaKnown RBP2.61□□□□□ -1.99
SMC4-220ENST00000488017 EMC1Q8N766 993 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 OR1J2Q8NGS2 313 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 ZCCHC10Q8TBK6 192 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 RFT1Q96AA3 541 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 KLHL15Q96M94 604 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 USP28Q96RU2 1077 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 LBHD1Q9BQE6 289 aaPredicted RBP2.61□□□□□ -1.99
SMC4-220ENST00000488017 FUCA2Q9BTY2 467 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 PITPNM3Q9BZ71 974 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 ASAH2Q9NR71 780 aa2.61□□□□□ -1.99
SMC4-220ENST00000488017 TEX13DA0A0J9YY54 714 aaPredicted RBP2.6□□□□□ -1.99
SMC4-220ENST00000488017 OR6C76A6NM76 312 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 EIF4E1BA6NMX2 242 aaKnown RBP2.6□□□□□ -1.99
SMC4-220ENST00000488017 PIK3R1P27986 724 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 PGM1P36871 562 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 MAGEA11P43364 429 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 GSDMDP57764 484 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 CDR2Q01850 454 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 PAX8Q06710 450 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 PNLIPRP3Q17RR3 467 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 CYP4A22Q5TCH4 519 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 ATG16L1Q676U5 607 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 DCLK2Q8N568 766 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.6□□□□□ -1.99
SMC4-220ENST00000488017 ZNF383Q8NA42 475 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 HPSE2Q8WWQ2 592 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 SEMA3CQ99985 751 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 SLC6A13Q9NSD5 602 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 INTS9Q9NV88 658 aaKnown RBP2.6□□□□□ -1.99
SMC4-220ENST00000488017 MPP6Q9NZW5 540 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 SLC7A7Q9UM01 511 aa2.6□□□□□ -1.99
SMC4-220ENST00000488017 TMEM184BQ9Y519 407 aaPredicted RBP2.6□□□□□ -1.99
SMC4-220ENST00000488017 LRRC53A6NM62 1247 aa2.59□□□□□ -1.99
SMC4-220ENST00000488017 PHOX2AO14813 284 aa2.59□□□□□ -1.99
SMC4-220ENST00000488017 KLF11O14901 512 aa2.59□□□□□ -1.99
SMC4-220ENST00000488017 ZNF182P17025 639 aaPredicted RBP2.59□□□□□ -1.99
SMC4-220ENST00000488017 ZBTB25P24278 435 aa2.59□□□□□ -1.99
SMC4-220ENST00000488017 THOP1P52888 689 aa2.59□□□□□ -1.99
SMC4-220ENST00000488017 RHBDL3P58872 404 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms