RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 OLIG1Q8TAK6 271 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 GSDMBQ8TAX9 411 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 TRPC4APQ8TEL6 797 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 RFFLQ8WZ73 363 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 GAD1Q99259 594 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 SEC62Q99442 399 aaKnown RBP2.93□□□□□ -1.94
VPS50-216ENST00000484954 ASCL2Q99929 193 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 TMEM39BQ9GZU3 492 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 RRP7BPQ9NSQ0 103 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 MRPS28Q9Y2Q9 187 aaKnown RBP2.93□□□□□ -1.94
VPS50-216ENST00000484954 YIPF1Q9Y548 306 aa2.93□□□□□ -1.94
VPS50-216ENST00000484954 IGKV3D-20A0A0C4DH25 116 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 TMEM8BA6NDV4 472 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 ZBTB43O43298 467 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 BUD23O43709 281 aaKnown RBP2.92□□□□□ -1.94
VPS50-216ENST00000484954 NDUFS3O75489 264 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 DAB1O75553 588 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 EIF3JO75822 258 aaKnown RBP2.92□□□□□ -1.94
VPS50-216ENST00000484954 NADKO95544 446 aaPredicted RBP2.92□□□□□ -1.94
VPS50-216ENST00000484954 TBX18O95935 607 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 RNF224P0DH78 156 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 EPHA2P29317 976 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 PIK3CAP42336 1068 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 MSH2P43246 934 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 GPR143P51810 404 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 IRX1P78414 480 aaPredicted RBP2.92□□□□□ -1.94
VPS50-216ENST00000484954 EIF4A2Q14240 407 aaKnown RBP2.92□□□□□ -1.94
VPS50-216ENST00000484954 MVPQ14764 893 aaKnown RBP2.92□□□□□ -1.94
VPS50-216ENST00000484954 ZFP69Q49AA0 526 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 INTS11Q5TA45 600 aaKnown RBP2.92□□□□□ -1.94
VPS50-216ENST00000484954 LCE3AQ5TA76 89 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 GKAP1Q5VSY0 366 aaPredicted RBP2.92□□□□□ -1.94
VPS50-216ENST00000484954 CFAP77Q6ZQR2 320 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 SH2D5Q6ZV89 423 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 GALNT13Q8IUC8 556 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 SMC5Q8IY18 1101 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 PCYOX1LQ8NBM8 494 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 PPP4R1Q8TF05 950 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 SMPDL3BQ92485 455 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 ZNF653Q96CK0 615 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 PRAC1Q96KF2 57 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 ATOH8Q96SQ7 321 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 RHNO1Q9BSD3 238 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 PDCL3Q9H2J4 239 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 FGF22Q9HCT0 170 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 PGAP2Q9UHJ9 254 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 GTF2A1LQ9UNN4 478 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 KCNJ14Q9UNX9 436 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 STK36Q9NRP7 1315 aa2.92□□□□□ -1.94
VPS50-216ENST00000484954 LIPT2A6NK58 231 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 CLIC2O15247 247 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 OGG1O15527 345 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 FRMD6-AS1P0C7T7 363 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 ACP2P11117 423 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 RARGP13631 454 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 LIFP15018 202 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 NKX2-1P43699 371 aaPredicted RBP2.91□□□□□ -1.94
VPS50-216ENST00000484954 PPP2R2BQ00005 443 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 GOLGA8DPQ0D2H9 430 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 MFAP5Q13361 173 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 MEP1AQ16819 746 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 ASTE1Q2TB18 679 aaPredicted RBP2.91□□□□□ -1.94
VPS50-216ENST00000484954 BHLHB9Q6PI77 547 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 NCEH1Q6PIU2 408 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 PXKQ7Z7A4 578 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 OR2T12Q8NG77 320 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 SGCDQ92629 289 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 ARHGEF2Q92974 986 aaKnown RBP2.91□□□□□ -1.94
VPS50-216ENST00000484954 ANKRD9Q96BM1 317 aaPredicted RBP2.91□□□□□ -1.94
VPS50-216ENST00000484954 SLC47A1Q96FL8 570 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 ZNF582Q96NG8 517 aaPredicted RBP2.91□□□□□ -1.94
VPS50-216ENST00000484954 SLA2Q9H6Q3 261 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 ZNF71Q9NQZ8 489 aaPredicted RBP2.91□□□□□ -1.94
VPS50-216ENST00000484954 INTS10Q9NVR2 710 aaKnown RBP2.91□□□□□ -1.94
VPS50-216ENST00000484954 TRMT1Q9NXH9 659 aaKnown RBP2.91□□□□□ -1.94
VPS50-216ENST00000484954 RASAL2Q9UJF2 1139 aa2.91□□□□□ -1.94
VPS50-216ENST00000484954 PSMD14O00487 310 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 CKMT2P17540 419 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 NFKBIAP25963 317 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 HOXA13P31271 388 aaPredicted RBP2.9□□□□□ -1.95
VPS50-216ENST00000484954 LUMP51884 338 aaPredicted RBP2.9□□□□□ -1.95
VPS50-216ENST00000484954 ASPRV1Q53RT3 343 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 ADAMTSL4-AS1Q5T5F5 129 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 ACSM2BQ68CK6 577 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 KIAA0930Q6ICG6 404 aaPredicted RBP2.9□□□□□ -1.95
VPS50-216ENST00000484954 TPRG1Q6ZUI0 275 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 DENND5BQ6ZUT9 1274 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 PLD3Q8IV08 490 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 DDHD1Q8NEL9 900 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 TDRD7Q8NHU6 1098 aaKnown RBP2.9□□□□□ -1.95
VPS50-216ENST00000484954 HCAR2Q8TDS4 363 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 OR2A14Q96R47 310 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 HGH1Q9BTY7 390 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 CDK19Q9BWU1 502 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 SLC26A6Q9BXS9 759 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 PLK3Q9H4B4 646 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 ERVMER34-1Q9H9K5 563 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 PAG1Q9NWQ8 432 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 C2orf42Q9NWW7 574 aa2.9□□□□□ -1.95
VPS50-216ENST00000484954 MIOSQ9NXC5 875 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms