RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	CATSPERZ	Q9NTU4	200 aa		10.1	□□□□□ -0.79
HDAC6-222	ENST00000478095	SCHIP1	Q9P0W5	487 aa	Predicted RBP	10.1	□□□□□ -0.79
HDAC6-222	ENST00000478095	LRIT1	Q9P2V4	623 aa		10.1	□□□□□ -0.79
HDAC6-222	ENST00000478095	MRFAP1	Q9Y605	127 aa		10.1	□□□□□ -0.79
HDAC6-222	ENST00000478095	PRSS21	Q9Y6M0	314 aa		10.1	□□□□□ -0.79
HDAC6-222	ENST00000478095	CNOT1	A5YKK6	2376 aa	Known RBP	10.1	□□□□□ -0.79
HDAC6-222	ENST00000478095	TP53BP1	Q12888	1972 aa	Predicted RBP	10.1	□□□□□ -0.79
HDAC6-222	ENST00000478095	IGLV3-16	A0A075B6K0	115 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095		A6NCN8	305 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	FAM187A	A6NFU0	413 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	RHPN2P1	A8MT19	583 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	KIF2A	O00139	706 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	CD3EAP	O15446	510 aa	Known RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	OPA1	O60313	960 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	RPLP0	P05388	317 aa	Known RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	GP1BA	P07359	652 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	F7	P08709	466 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	F3	P13726	295 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	GLB1	P16278	677 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	VCL	P18206	1134 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	PRLHR	P49683	370 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	INSM1	Q01101	510 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	DHX9	Q08211	1270 aa	Known RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	MORF4L2	Q15014	288 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	WHAMMP3	Q1A5X7	153 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	BBS9	Q3SYG4	887 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	ANKRD20A4	Q4UJ75	823 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	ZNF572	Q7Z3I7	529 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	MAATS1	Q7Z4T9	603 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	C17orf82	Q86X59	251 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	SFRP1	Q8N474	314 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	LILRA3	Q8N6C8	439 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	KIF18A	Q8NI77	898 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	STAMBPL1	Q96FJ0	436 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	ZNF514	Q96K75	400 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	SIGLEC10	Q96LC7	697 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	FCRL3	Q96P31	734 aa	Predicted RBP	10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	ANAPC5	Q9UJX4	755 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	PSMD13	Q9UNM6	376 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	WASF3	Q9UPY6	502 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	WDR37	Q9Y2I8	494 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	RPS6KL1	Q9Y6S9	549 aa		10.09	□□□□□ -0.79
HDAC6-222	ENST00000478095	NCOR2	Q9Y618	2525 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	SCN8A	Q9UQD0	1980 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	COL5A1	P20908	1838 aa	Predicted RBP	10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	LRP4	O75096	1905 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	PRAMEF33	A0A0G2JMD5	474 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	ZCWPW2	A0A1B0GU75	182 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	FAM237B	A0A1B0GVD1	139 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	MGAT4D	A6NG13	374 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	PRR19	A6NJB7	356 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	OR52A4P	A6NMU1	304 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	PPM1D	O15297	605 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	TP73	O15350	636 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	NUDT21	O43809	227 aa	Known RBP	10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	TUBB4A	P04350	444 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	POLB	P06746	335 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	BRAF	P15056	766 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	ITGB6	P18564	788 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	PGAM1	P18669	254 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	IDS	P22304	550 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	NSG1	P42857	185 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	ARCN1	P48444	511 aa	Known RBP	10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	CLCNKA	P51800	687 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	OR1D5	P58170	312 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	CCL7	P80098	99 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	HHEX	Q03014	270 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	KCNC4	Q03721	635 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	ITIH4	Q14624	930 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	AMZ1	Q400G9	498 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	DNAJC21	Q5F1R6	531 aa	Known RBP	10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	AARS2	Q5JTZ9	985 aa	Known RBP	10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	KIAA0930	Q6ICG6	404 aa	Predicted RBP	10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	IYD	Q6PHW0	289 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	XKR5	Q6UX68	686 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	NAPRT	Q6XQN6	538 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	CERS6	Q6ZMG9	384 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	SPRED1	Q7Z699	444 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	CCNJL	Q8IV13	435 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	CFAP206	Q8IYR0	622 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	OR2L2	Q8NH16	312 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	HEXDC	Q8WVB3	486 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	TTC1	Q99614	292 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	WDR83	Q9BRX9	315 aa	Known RBP	10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	ERP44	Q9BS26	406 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	ANGPTL2	Q9UKU9	493 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	CHMP2B	Q9UQN3	213 aa		10.08	□□□□□ -0.8
HDAC6-222	ENST00000478095	CACNA1A	O00555	2505 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095		A0A1W2PQM1	296 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	MAGEB16	A2A368	324 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	IQCF5	A8MTL0	148 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	NDUFS3	O75489	264 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	USP1	O94782	785 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	AP2A2	O94973	939 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	MT-CO3	P00414	261 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	SLC2A4	P14672	509 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	JUP	P14923	745 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	PAM	P19021	973 aa		10.07	□□□□□ -0.8
HDAC6-222	ENST00000478095	ALDH4A1	P30038	563 aa		10.07	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms