RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 POP7O75817 140 aaKnown RBP12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SLC4A1P02730 911 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FURINP09958 794 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ADRA1AP35348 466 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SPAM1P38567 509 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MARCKSL1P49006 195 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PPM1FP49593 454 aaPredicted RBP12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SEPHS1P49903 392 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PPP1CAP62136 330 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TLE1Q04724 770 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FOXM1Q08050 763 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 XRCC4Q13426 336 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 LLGL1Q15334 1064 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PPP2R5EQ16537 467 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 LDLRAP1Q5SW96 308 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GPRC6AQ5T6X5 926 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CACHD1Q5VU97 1274 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TMEM220Q6QAJ8 160 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 C6orf15Q6UXA7 325 aaPredicted RBP12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 BBS12Q6ZW61 710 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PID1Q7Z2X4 250 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZC3H18Q86VM9 953 aaKnown RBP12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PTRH1Q86Y79 214 aaKnown RBP12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TRAPPC5Q8IUR0 188 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CNGA4Q8IV77 575 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TRIM48Q8IWZ4 208 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SLC25A41Q8N5S1 370 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TC2NQ8N9U0 490 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GPR150Q8NGU9 434 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 APOBEC4Q8WW27 367 aaKnown RBP12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 P3H4Q92791 437 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 COL26A1Q96A83 441 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZDHHC12Q96GR4 267 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ABHD17AQ96GS6 310 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FCRL4Q96PJ5 515 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 OR6C1Q96RD1 312 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ULBP3Q9BZM4 244 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TRHDEQ9UKU6 1024 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KCNMB2Q9Y691 235 aa12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 RP1L1Q8IWN7 2480 aaPredicted RBP12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 USP9XQ93008 2570 aaPredicted RBP12□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GLYATL1P3A0A0U1RQE8 302 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CLEC18AA5D8T8 446 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 AKR1B15C9JRZ8 316 aaPredicted RBP11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 NDUFA10O95299 355 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TIAF1O95411 115 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 AGTP01019 485 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TPM1P09493 284 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PRKAR1AP10644 381 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TNNT1P13805 278 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 VCLP18206 1134 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TCN2P20062 427 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CASRP41180 1078 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 MAGEA1P43355 309 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 XIAPP98170 497 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 LAMB3Q13751 1172 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ITGA9Q13797 1035 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 NFE2L1Q14494 772 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 PTPRCAPQ14761 206 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 DEFB109BQ30KR1 87 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ATP1A1-AS1Q5TC04 95 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KAZNQ674X7 775 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 C11orf63Q6NUN7 778 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CLEC18BQ6UXF7 455 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FAM151BQ6UXP7 276 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KLHDC8BQ8IXV7 354 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CLEC18CQ8NCF0 446 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GALNT6Q8NCL4 622 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZNF398Q8TD17 642 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZFPM2Q8WW38 1151 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KRT35Q92764 455 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CXorf40BQ96DE9 158 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZNF514Q96K75 400 aaPredicted RBP11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 LINC00615Q96LM1 132 aaPredicted RBP11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 C19orf43Q9BQ61 176 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 EPN3Q9H201 632 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KLHL8Q9P2G9 620 aaPredicted RBP11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 TRIM10Q9UDY6 481 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ANAPC2Q9UJX6 822 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 CROTQ9UKG9 612 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 EFR3BQ9Y2G0 817 aa11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 USP9YO00507 2555 aaPredicted RBP11.99□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 APOC4-APOC2K7ER74 178 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 BUD23O43709 281 aaKnown RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 KIAA0754O94854 1291 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 APOC2P02655 101 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FOLR1P15328 257 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 DLSTP36957 453 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GTF2H3Q13889 308 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 SKIDA1Q1XH10 827 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZNF658BQ4V348 819 aaPredicted RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ODF2Q5BJF6 829 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 ZNF517Q6ZMY9 492 aaPredicted RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 FAM92BQ6ZTR7 304 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GLT6D1Q7Z4J2 308 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 BPHLQ86WA6 291 aaPredicted RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 D2HGDHQ8N465 521 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 IPMKQ8NFU5 416 aa11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 C9orf43Q8TAL5 461 aaPredicted RBP11.98□□□□□ -0.49
MSH5-SAPCD1-205ENST00000476085 GDAP1Q8TB36 358 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms