RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MYO1GB0I1T2 1018 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 RAD51BO15315 384 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 YBX1P67809 324 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 FOLH1Q04609 750 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 GTF2H3Q13889 308 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 MAPRE2Q15555 327 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 UBE2R2Q712K3 238 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 FAM124AQ86V42 546 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 OFCC1Q8IZS5 231 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 SNX19Q92543 992 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 SH3KBP1Q96B97 665 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 TEX37Q96LM6 180 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 GRIP2Q9C0E4 1043 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 BRD9Q9H8M2 597 aa13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 INTS7Q9NVH2 962 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-211ENST00000471947 LATO43561 262 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 FKBP6O75344 327 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 RHOP08100 348 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 GNAZP19086 355 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 RPIAP49247 311 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 MEF2AQ02078 507 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 LRRC23Q53EV4 343 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 NECAB2Q7Z6G3 386 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF786Q8N393 782 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 TMEM151AQ8N4L1 468 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 OR2AP1Q8NGE2 309 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ACTRT2Q8TDY3 377 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ZBTB18Q99592 522 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 KCTD14Q9BQ13 255 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 PARVBQ9HBI1 364 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 SPAG4Q9NPE6 437 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 NLE1Q9NVX2 485 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 TRAFD1O14545 582 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 B3GALT4O96024 378 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 G6PDP11413 515 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 MSH3P20585 1137 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ATP6V1B2P21281 511 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 HOXC13P31276 330 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 PLCL1Q15111 1095 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ARHGAP15Q53QZ3 475 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 SMG7Q92540 1137 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ZSWIM3Q96MP5 696 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 EFHD1Q9BUP0 239 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 TRIM54Q9BYV2 358 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ELAC1Q9H777 363 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 BCAP29Q9UHQ4 241 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF490Q9ULM2 529 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 A0A0G2JN53 185 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 LOC730098B7Z3J9 87 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 EN2P19622 333 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 MAT2AP31153 395 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 CYP4F2P78329 520 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 SQLEQ14534 574 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 MPPE1Q53F39 396 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 USP45Q70EL2 814 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 C11orf74Q86VG3 221 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF683Q8IZ20 524 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 KRTCAP2Q8N6L1 136 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 EID2BQ96D98 161 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 TMEM175Q9BSA9 504 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 RIOK2Q9BVS4 552 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 CACNA2D2Q9NY47 1150 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 INTS6Q9UL03 887 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 SLC22A14Q9Y267 594 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 SCN4AP35499 1836 aa13.55□□□□□ -0.24
CCDC88A-211ENST00000471947 ULK1O75385 1050 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF682O95780 498 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 CAPN3P20807 821 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 LAPTM5Q13571 262 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 GTF2H2Q13888 395 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 GTF2H2CQ6P1K8 395 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 FBXL19Q6PCT2 694 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 SETD3Q86TU7 594 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 PHACTR4Q8IZ21 702 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 CLEC4FQ8N1N0 589 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 MAGEE2Q8TD90 523 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 TMEM79Q9BSE2 394 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 DPY30Q9C005 99 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 CCDC90BQ9GZT6 254 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 SUV39H2Q9H5I1 410 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 C11orf49Q9H6J7 331 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 TDP1Q9NUW8 608 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 SH3BP4Q9P0V3 963 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 TDRD15B5MCY1 1934 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 SZT2Q5T011 3432 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 LEFTY1O75610 366 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 ESRRBO95718 433 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 PABPC1P11940 636 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 FDXRP22570 491 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 CACNG1Q06432 222 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 MSLNQ13421 630 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 LAMB3Q13751 1172 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 GRM2Q14416 872 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 CTSL3PQ5NE16 218 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 LETMD1Q6P1Q0 360 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 RBFAQ8N0V3 343 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 EMILIN2Q9BXX0 1053 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 DYRK4Q9NR20 520 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 RIC8BQ9NVN3 520 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms