RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 NUDT4Q9NZJ9 180 aa9.25□□□□□ -0.93
VPS52-216ENST00000471309 MARCOQ9UEW3 520 aaPredicted RBP9.25□□□□□ -0.93
VPS52-216ENST00000471309 SCML1Q9UN30 329 aa9.25□□□□□ -0.93
VPS52-216ENST00000471309 COQ6Q9Y2Z9 468 aa9.25□□□□□ -0.93
VPS52-216ENST00000471309 COL6A3P12111 3177 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 A0A1W2PP55 124 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 SHISA7A6NL88 538 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 SLCO1B7G3V0H7 640 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 ZNF195O14628 629 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 NARSO43776 548 aaKnown RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 NUAK1O60285 661 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 RNASEH2AO75792 299 aaKnown RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 TM7SF2O76062 418 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 DNTTP04053 509 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 ASGR2P07307 311 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 RPS17P08708 135 aaKnown RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 KITP10721 976 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 GFAPP14136 432 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 COL9A1P20849 921 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 MPSTP25325 297 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 TEAD1P28347 426 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 GPR1P46091 355 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 PRLHRP49683 370 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 RPL14P50914 215 aaKnown RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 ALDH18A1P54886 795 aaKnown RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 SP140Q13342 867 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 TDGQ13569 410 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 CCINQ13939 588 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 SETDB1Q15047 1291 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 PPP1R3AQ16821 1122 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 PUS10Q3MIT2 529 aaKnown RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 TTC31Q49AM3 519 aaPredicted RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 BCL7AQ4VC05 210 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 LACTB2Q53H82 288 aaPredicted RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 EOGTQ5NDL2 527 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 PLEKHS1Q5SXH7 462 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 RAET1GQ6H3X3 334 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 KIAA1161Q6NSJ0 714 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 SBSNQ6UWP8 590 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 ADAMTSL4Q6UY14 1074 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 DET1Q7L5Y6 550 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 CACUL1Q86Y37 369 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 GPSM1Q86YR5 675 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 FBXO39Q8N4B4 442 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 FITM2Q8N6M3 262 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 NAT14Q8WUY8 206 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 SKA1Q96BD8 255 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 ERLEC1Q96DZ1 483 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 PHF21BQ96EK2 531 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 LRRC37BQ96QE4 947 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 FAM126AQ9BYI3 521 aaPredicted RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 MKRN2Q9H000 416 aaKnown RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 EPHX3Q9H6B9 360 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 PNPOQ9NVS9 261 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 DNAJC28Q9NX36 388 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 SERGEFQ9UGK8 458 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 MBD1Q9UIS9 605 aaPredicted RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 CNOT6Q9ULM6 557 aaKnown RBP9.24□□□□□ -0.93
VPS52-216ENST00000471309 FZD4Q9ULV1 537 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 OARD1Q9Y530 152 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 BPTFQ12830 3046 aa9.24□□□□□ -0.93
VPS52-216ENST00000471309 MYO9BQ13459 2157 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 MATN2O00339 956 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 RAD51BO15315 384 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 PLRG1O43660 514 aaKnown RBP9.23□□□□□ -0.93
VPS52-216ENST00000471309 SNX2O60749 519 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 ATG13O75143 517 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 MTX2O75431 263 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 S100BP04271 92 aaPredicted RBP9.23□□□□□ -0.93
VPS52-216ENST00000471309 ENO2P09104 434 aaPredicted RBP9.23□□□□□ -0.93
VPS52-216ENST00000471309 GSTM1P09488 218 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 MPC1LP0DKB6 136 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 CCR7P32248 378 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 CCR10P46092 362 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 HK3P52790 923 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 GSTM4Q03013 218 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 SFSWAPQ12872 951 aaKnown RBP9.23□□□□□ -0.93
VPS52-216ENST00000471309 TMEM115Q12893 351 aaPredicted RBP9.23□□□□□ -0.93
VPS52-216ENST00000471309 TGFBIQ15582 683 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 PFKFB4Q16877 469 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 GALNTL6Q49A17 601 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 GLIPR1L2Q4G1C9 344 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 UNC50Q53HI1 259 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 IER5LQ5T953 404 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 FAM91A1Q658Y4 838 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 PTCRAQ6ISU1 281 aaPredicted RBP9.23□□□□□ -0.93
VPS52-216ENST00000471309 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.23□□□□□ -0.93
VPS52-216ENST00000471309 NEK10Q6ZWH5 1172 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 USP30Q70CQ3 517 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 FRA10AC1Q70Z53 315 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 MAVSQ7Z434 540 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 CUZD1Q86UP6 607 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 KBTBD6Q86V97 674 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 TMPRSS6Q8IU80 811 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 PELI3Q8N2H9 469 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 AFAP1L2Q8N4X5 818 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 RASGEF1AQ8N9B8 481 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 PDPRQ8NCN5 879 aa9.23□□□□□ -0.93
VPS52-216ENST00000471309 SPDYE1Q8NFV5 336 aaPredicted RBP9.23□□□□□ -0.93
VPS52-216ENST00000471309 FAM3CQ92520 227 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms