RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 OR56A4Q8NGH8 313 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 ZFP28Q8NHY6 868 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 TMIGD2Q96BF3 282 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 SEPHS2Q99611 448 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 SLC2A11Q9BYW1 496 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 ALG2Q9H553 416 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 SOX17Q9H6I2 414 aaPredicted RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 MRPL40Q9NQ50 206 aaKnown RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 MBD1Q9UIS9 605 aaPredicted RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 SZT2Q5T011 3432 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 DHRS12A0PJE2 317 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 STX16O14662 325 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 HTRA2O43464 458 aaPredicted RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 SLC25A14O95258 325 aaPredicted RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 PTGER3P43115 390 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 POLR2JP52435 117 aaKnown RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 LIPEQ05469 1076 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 NANOGP8Q6NSW7 305 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 FRA10AC1Q70Z53 315 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 MFN1Q8IWA4 741 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 TOP1MTQ969P6 601 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 PPM1MQ96MI6 270 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 CAAP1Q9H8G2 361 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 NANOGQ9H9S0 305 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 CCM2LQ9NUG4 571 aaPredicted RBP18.84■□□□□ 0.61
VIM-203ENST00000469543 BACE2Q9Y5Z0 518 aa18.84■□□□□ 0.61
VIM-203ENST00000469543 PITPNM1O00562 1244 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 PRMT5O14744 637 aaPredicted RBP18.83■□□□□ 0.61
VIM-203ENST00000469543 HNF1BP35680 557 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 CTSOP43234 321 aaPredicted RBP18.83■□□□□ 0.61
VIM-203ENST00000469543 STK19P49842 368 aaPredicted RBP18.83■□□□□ 0.61
VIM-203ENST00000469543 SELPLGQ14242 412 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 DEFB115Q30KQ5 88 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 SLC44A4Q53GD3 710 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 PYCR3Q53H96 274 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 SGO1Q5FBB7 561 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 GOLGA7Q7Z5G4 137 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 RNF168Q8IYW5 571 aaPredicted RBP18.83■□□□□ 0.61
VIM-203ENST00000469543 ACTL8Q9H568 366 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 IPPKQ9H8X2 491 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 ZFYVE1Q9HBF4 777 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 PLXNA4Q9HCM2 1894 aa18.83■□□□□ 0.61
VIM-203ENST00000469543 BBIP1A8MTZ0 92 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 DLGAP1O14490 977 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 HOXA2O43364 376 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 SEC24DO94855 1032 aaPredicted RBP18.83■□□□□ 0.6
VIM-203ENST00000469543 TNFAIP8O95379 198 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 MLYCDO95822 493 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 ESR1P03372 595 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 PTGR1Q14914 329 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 ARMC12Q5T9G4 340 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 CWF19L1Q69YN2 538 aaKnown RBP18.83■□□□□ 0.6
VIM-203ENST00000469543 VWCEQ96DN2 955 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 MTFMTQ96DP5 389 aaKnown RBP18.83■□□□□ 0.6
VIM-203ENST00000469543 MRGBPQ9NV56 204 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 DHRS7Q9Y394 339 aa18.83■□□□□ 0.6
VIM-203ENST00000469543 H3BSA7 217 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 TAPBPO15533 448 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 FFAR2O15552 330 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 PGLSO95336 258 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 CHEK2O96017 543 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 PSMA3P25788 255 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 CD70P32970 193 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 RPL5P46777 297 aaKnown RBP18.82■□□□□ 0.6
VIM-203ENST00000469543 CLCN4P51793 760 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 MTPNP58546 118 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 HTRA3P83110 453 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 CACNG1Q06432 222 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 DGKKQ5KSL6 1271 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 BBS7Q8IWZ6 715 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 ZNF296Q8WUU4 475 aaPredicted RBP18.82■□□□□ 0.6
VIM-203ENST00000469543 C1QTNF3Q9BXJ4 246 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 OAZ3Q9UMX2 235 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 IRX1P78414 480 aaPredicted RBP18.82■□□□□ 0.6
VIM-203ENST00000469543 HMGCS1Q01581 520 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 ATP6AP1LQ52LC2 224 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 NHSL2Q5HYW2 709 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 OGFOD2Q6N063 350 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 ERMP1Q7Z2K6 904 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 HS6ST3Q8IZP7 471 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 MYO19Q96H55 970 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 OLAHQ9NV23 265 aa18.82■□□□□ 0.6
VIM-203ENST00000469543 NUP214P35658 2090 aaPredicted RBP18.81■□□□□ 0.6
VIM-203ENST00000469543 H7C0S8 307 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 ZNF821O75541 412 aaPredicted RBP18.81■□□□□ 0.6
VIM-203ENST00000469543 OR4D2P58180 307 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 ROR2Q01974 943 aaKnown RBP18.81■□□□□ 0.6
VIM-203ENST00000469543 MTA1Q13330 715 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 GTF2H2Q13888 395 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 INO80DQ53TQ3 878 aaPredicted RBP18.81■□□□□ 0.6
VIM-203ENST00000469543 GTF2H2CQ6P1K8 395 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 GAREM2Q75VX8 874 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 AHI1Q8N157 1196 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 UHRF1Q96T88 793 aaPredicted RBP18.81■□□□□ 0.6
VIM-203ENST00000469543 CLPBQ9H078 707 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 RPF2Q9H7B2 306 aaKnown RBP18.81■□□□□ 0.6
VIM-203ENST00000469543 GID8Q9NWU2 228 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 ZNHIT2Q9UHR6 403 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 STAMBPO95630 424 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 SOD2P04179 222 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms