RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 IZUMO3Q5VZ72 239 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 ZNF534Q76KX8 674 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 MARK2Q7KZI7 788 aaKnown RBP17.47■□□□□ 0.39
COL7A1-205ENST00000465238 ZNF572Q7Z3I7 529 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-205ENST00000465238 SFTPA2Q8IWL1 248 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 NAT8LQ8N9F0 302 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 CDKN2AIPNLQ96HQ2 116 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 TRIM51Q9BSJ1 452 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 ARFGAP3Q9NP61 516 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 SPATS2LQ9NUQ6 558 aaKnown RBP17.47■□□□□ 0.39
COL7A1-205ENST00000465238 PISDQ9UG56 409 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 RIMKLBQ9ULI2 386 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 SUFUQ9UMX1 484 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 LOXL2Q9Y4K0 774 aa17.47■□□□□ 0.39
COL7A1-205ENST00000465238 OAS3Q9Y6K5 1087 aaKnown RBP17.47■□□□□ 0.39
COL7A1-205ENST00000465238 FLNBO75369 2602 aaKnown RBP17.47■□□□□ 0.39
COL7A1-205ENST00000465238 SETXQ7Z333 2677 aaKnown RBP17.46■□□□□ 0.39
COL7A1-205ENST00000465238 EFCAB8A8MWE9 144 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 CCL22O00626 93 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 GAPDHSO14556 408 aaPredicted RBP17.46■□□□□ 0.39
COL7A1-205ENST00000465238 ZW10O43264 779 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 HGFP14210 728 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 MC4RP32245 332 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 XIAPP98170 497 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 PEX6Q13608 980 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 ZRANB3Q5FWF4 1079 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 LDLRAP1Q5SW96 308 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 ZNF648Q5T619 568 aaPredicted RBP17.46■□□□□ 0.39
COL7A1-205ENST00000465238 CAND1Q86VP6 1230 aaKnown RBP17.46■□□□□ 0.39
COL7A1-205ENST00000465238 C17orf82Q86X59 251 aaPredicted RBP17.46■□□□□ 0.39
COL7A1-205ENST00000465238 NRROSQ86YC3 692 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 TTC25Q96NG3 672 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 CMKLR1Q99788 373 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 TRIM31Q9BZY9 425 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 OR2AG1Q9H205 316 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 RMI1Q9H9A7 625 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 CHRAC1Q9NRG0 131 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 ATXN10Q9UBB4 475 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 ZNHIT2Q9UHR6 403 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 CRLS1Q9UJA2 301 aa17.46■□□□□ 0.39
COL7A1-205ENST00000465238 H7C0S8 307 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 VEGFDO43915 354 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 AVILO75366 819 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 CPNE6O95741 557 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 FUCA1P04066 466 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 PLA2G2AP14555 144 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 PSMA3P25788 255 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 IVDP26440 423 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 CRADDP78560 199 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 B4GALNT1Q00973 533 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 NFATC2Q13469 925 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 GTF2H3Q13889 308 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 CLPPQ16740 277 aaPredicted RBP17.45■□□□□ 0.38
COL7A1-205ENST00000465238 MAP9Q49MG5 647 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 GPR33Q49SQ1 333 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 ZNF438Q7Z4V0 828 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 SNX20Q7Z614 316 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 ADGRG6Q86SQ4 1221 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 PIM3Q86V86 326 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 HOOK3Q86VS8 718 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 GALNT13Q8IUC8 556 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 SLITRK4Q8IW52 837 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 MNS1Q8NEH6 495 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 ZDHHC1Q8WTX9 485 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 PTCD2Q8WV60 388 aaKnown RBP17.45■□□□□ 0.38
COL7A1-205ENST00000465238 PEX13Q92968 403 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 ULK4Q96C45 1275 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 SCARF2Q96GP6 870 aaPredicted RBP17.45■□□□□ 0.38
COL7A1-205ENST00000465238 SNF8Q96H20 258 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 OR2M4Q96R27 311 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 ZCCHC2Q9C0B9 1178 aaKnown RBP17.45■□□□□ 0.38
COL7A1-205ENST00000465238 FAM96AQ9H5X1 160 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 SMOXQ9NWM0 555 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 SYBUQ9NX95 663 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 TAAR2Q9P1P5 351 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 TMPRSS11EQ9UL52 423 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 MRFAP1Q9Y605 127 aa17.45■□□□□ 0.38
COL7A1-205ENST00000465238 MAGEB16A2A368 324 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 SDR42E2A6NKP2 422 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 RHPN2P1A8MT19 583 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 GPR89AB7ZAQ6 455 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 SMAPO00193 183 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 NDC80O14777 642 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 RAD51CO43502 376 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 NUAK1O60285 661 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 MTX2O75431 263 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 CDK14O94921 469 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 GPR89BP0CG08 455 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 LIPCP11150 499 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 MAZP56270 477 aaKnown RBP17.44■□□□□ 0.38
COL7A1-205ENST00000465238 PRAMEP78395 509 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 MRPS25P82663 173 aaKnown RBP17.44■□□□□ 0.38
COL7A1-205ENST00000465238 CACNG1Q06432 222 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 TMEM115Q12893 351 aaPredicted RBP17.44■□□□□ 0.38
COL7A1-205ENST00000465238 LY6DQ14210 128 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 NR1D2Q14995 579 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 MORF4L2Q15014 288 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 PYCR3Q53H96 274 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 PHF19Q5T6S3 580 aa17.44■□□□□ 0.38
COL7A1-205ENST00000465238 GPRC6AQ5T6X5 926 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms