RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 GPR107Q5VW38 600 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 KCTD11Q693B1 232 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 UBE2R2Q712K3 238 aaPredicted RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 FAM9CQ8IZT9 166 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 LRRC58Q96CX6 371 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 MRM3Q9HC36 420 aaKnown RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 PCDH12Q9NPG4 1184 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 ADGRE2Q9UHX3 823 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 PCDHB1Q9Y5F3 818 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 ILVBLA1L0T0 632 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 NBNO60934 754 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 ANXA6P08133 673 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 COX7A2P14406 83 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 MYOGP15173 224 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 ARSAP15289 507 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 SLC7A1P30825 629 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 RPIAP49247 311 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 CLK1P49759 484 aaKnown RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 DNAJB13P59910 316 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 UFM1P61960 85 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 DEFB103AP81534 67 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 RHDQ02161 417 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 XKR4Q5GH76 650 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 ABRAXAS1Q6UWZ7 409 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 MAVSQ7Z434 540 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 ISCA2Q86U28 154 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 GPR156Q8NFN8 814 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 PYCR2Q96C36 320 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 SMIM14Q96QK8 99 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 HCSTQ9UBK5 93 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 BDP1A6H8Y1 2624 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 PPP6CO00743 305 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 RNASEH2AO75792 299 aaKnown RBP11.49□□□□□ -0.57
NPHP4-204ENST00000460696 MAPK8P45983 427 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 CDH15P55291 814 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 HIST2H2ACQ16777 129 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-204ENST00000460696 CLLU1OSQ5K130 101 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 HIST2H2AA3Q6FI13 130 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 ADCK1Q86TW2 530 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 TRAPPC5Q8IUR0 188 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 TBC1D21Q8IYX1 336 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 HPS4Q9NQG7 708 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 CNOT6Q9ULM6 557 aaKnown RBP11.49□□□□□ -0.57
NPHP4-204ENST00000460696 SNX6Q9UNH7 406 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 NEDD8-MDP1E9PL57 170 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 OAZ2O95190 189 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 GALTP07902 379 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 POU1F1P28069 291 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 FAM174BQ3ZCQ3 159 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 FAM91A1Q658Y4 838 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 TMEM26Q6ZUK4 368 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 GPR180Q86V85 440 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 BPIFB6Q8NFQ5 453 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 OR10A6Q8NH74 314 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 KIAA1191Q96A73 305 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 ZNF599Q96NL3 588 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 LRTM1Q9HBL6 345 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 ASAH2Q9NR71 780 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 MRPS23Q9Y3D9 190 aaKnown RBP11.49□□□□□ -0.57
NPHP4-204ENST00000460696 INSL6Q9Y581 213 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 DOCK1Q14185 1865 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 FFAR2O15552 330 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 CD1DP15813 335 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 MAGEA11P43364 429 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 PGFP49763 221 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 NUP107P57740 925 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 SEMA3BQ13214 749 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 SHKBP1Q8TBC3 707 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 PNPT1Q8TCS8 783 aaKnown RBP11.49□□□□□ -0.57
NPHP4-204ENST00000460696 PSKH2Q96QS6 385 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 NSUN3Q9H649 340 aaKnown RBP11.49□□□□□ -0.57
NPHP4-204ENST00000460696 ZNF556Q9HAH1 456 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 OSER1Q9NX31 292 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 KIAA1522Q9P206 1035 aaPredicted RBP11.49□□□□□ -0.57
NPHP4-204ENST00000460696 OAZ3Q9UMX2 235 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 YIPF1Q9Y548 306 aa11.49□□□□□ -0.57
NPHP4-204ENST00000460696 LCHNA4D1U4 455 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 I6L893 689 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-204ENST00000460696 EI24O14681 340 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 OR6B1O95007 311 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 EPOP01588 193 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 FOSL2P15408 326 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 POLR2EP19388 210 aaKnown RBP11.48□□□□□ -0.57
NPHP4-204ENST00000460696 EFNA1P20827 205 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-204ENST00000460696 SH3BP2P78314 561 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 DGCR6Q14129 220 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 SPIDRQ14159 915 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 ZNF549Q6P9A3 640 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 KDELC1Q6UW63 502 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 PLD3Q8IV08 490 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 ZBTB2Q8N680 514 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 C12orf76Q8N812 135 aaPredicted RBP11.48□□□□□ -0.57
NPHP4-204ENST00000460696 PANX1Q96RD7 426 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 TSEN34Q9BSV6 310 aaKnown RBP11.48□□□□□ -0.57
NPHP4-204ENST00000460696 ROGDIQ9GZN7 287 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 RSL24D1Q9UHA3 163 aaKnown RBP11.48□□□□□ -0.57
NPHP4-204ENST00000460696 A0A1W2PQ67 120 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 OR2AG2A6NM03 316 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 SLC28A1O00337 649 aa11.48□□□□□ -0.57
NPHP4-204ENST00000460696 RFXANKO14593 260 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms