RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	RGS14	O43566	566 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	PRKD3	O94806	890 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	RASAL1	O95294	804 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	MSH3	P20585	1137 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	SERPINB10	P48595	397 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	PTGR1	Q14914	329 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	PARP15	Q460N3	678 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	SLCO6A1	Q86UG4	719 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	P3H2	Q8IVL5	708 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	PHACTR4	Q8IZ21	702 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	CLDN19	Q8N6F1	224 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	KLHL23	Q8NBE8	558 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	PNPT1	Q8TCS8	783 aa	Known RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	CGREF1	Q99674	301 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	GPATCH1	Q9BRR8	931 aa	Known RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	TOR3A	Q9H497	397 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	RPF2	Q9H7B2	306 aa	Known RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	DUS2	Q9NX74	493 aa	Known RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	TTC3	P53804	2025 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	PTPRF	P10586	1907 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503		A0A1B0GTL3	188 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	FAM234B	A2RU67	622 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503		H3BMQ9	156 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	LDB2	O43679	373 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	DFNA5	O60443	496 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	FAM20B	O75063	409 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	NADK	O95544	446 aa	Predicted RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	HIST1H2AD	P20671	130 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	MYF6	P23409	242 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	ARSF	P54793	590 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	PURA	Q00577	322 aa	Known RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	TXNDC11	Q6PKC3	985 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	ZNF621	Q6ZSS3	439 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	BNIPL	Q7Z465	357 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	RASAL3	Q86YV0	1011 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	TICAM1	Q8IUC6	712 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	ADHFE1	Q8IWW8	467 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	HS6ST3	Q8IZP7	471 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	TMEM125	Q96AQ2	219 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	AURKB	Q96GD4	344 aa	Predicted RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	MAGED4	Q96JG8	741 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	HIST1H2AH	Q96KK5	128 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	COG8	Q96MW5	612 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	HIST1H2AJ	Q99878	128 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	H2AFJ	Q9BTM1	129 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	NPL	Q9BXD5	320 aa	Predicted RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	SDR39U1	Q9NRG7	319 aa	Predicted RBP	11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	AGPAT4	Q9NRZ5	378 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	OSER1	Q9NX31	292 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	FLRT1	Q9NZU1	646 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503	PDE10A	Q9Y233	779 aa		11.73	□□□□□ -0.53
MSH6-204	ENST00000445503		H0YJX3	145 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	UMPS	P11172	480 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	FDXR	P22570	491 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	CDH18	Q13634	790 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	PABPC1L	Q4VXU2	614 aa	Known RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	TMEM199	Q8N511	208 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	L3HYPDH	Q96EM0	354 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	SLC30A3	Q99726	388 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	RBMX2	Q9Y388	322 aa	Known RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	TMEM247	A6NEH6	219 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	DIRAS1	O95057	198 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	PAPSS2	O95340	614 aa	Predicted RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	NTRK1	P04629	796 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	MYCLP1	P12525	358 aa	Predicted RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	ZNF7	P17097	686 aa	Predicted RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	HTR7	P34969	479 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	ATP5C1	P36542	298 aa	Known RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	PCYT1A	P49585	367 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	ATP4B	P51164	291 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	EEFSEC	P57772	596 aa	Known RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	CRY1	Q16526	586 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	VARS2	Q5ST30	1063 aa	Known RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	INTS11	Q5TA45	600 aa	Known RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	LCN8	Q6JVE9	175 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	ZNF598	Q86UK7	904 aa	Known RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	SELENOM	Q8WWX9	145 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	FEM1A	Q9BSK4	669 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	CIPC	Q9C0C6	399 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	TUBB1	Q9H4B7	451 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	GKN1	Q9NS71	199 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	C3orf18	Q9UK00	162 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	ZNF490	Q9ULM2	529 aa	Predicted RBP	11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	SPO11	Q9Y5K1	396 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	LINC00854	A0A1B0GVQ3	168 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503		A0A1W2PQ67	120 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	ARVCF	O00192	962 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	NBN	O60934	754 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	XYLB	O75191	536 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	CHRNA1	P02708	482 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	HSD17B1	P14061	328 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	HAL	P42357	657 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	HSPA14	Q0VDF9	509 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	GTF2H2	Q13888	395 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	PSAPL1	Q6NUJ1	521 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	GTF2H2C	Q6P1K8	395 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	DET1	Q7L5Y6	550 aa		11.72	□□□□□ -0.53
MSH6-204	ENST00000445503	UMODL1-AS1	Q8N2C9	162 aa		11.72	□□□□□ -0.53

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