RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 CCDC50Q8IVM0 306 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 ESX1Q8N693 406 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 C9orf43Q8TAL5 461 aaPredicted RBP11.35□□□□□ -0.59
USP4-204ENST00000416417 KRT35Q92764 455 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 STAMBPL1Q96FJ0 436 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 TTC25Q96NG3 672 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 CATSPER2Q96P56 530 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 FAM118BQ9BPY3 351 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 APOL2Q9BQE5 337 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 POT1Q9NUX5 634 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 IL17CQ9P0M4 197 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 KCTD3Q9Y597 815 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 ARL5AQ9Y689 179 aa11.35□□□□□ -0.59
USP4-204ENST00000416417 TLN1Q9Y490 2541 aaKnown RBP11.34□□□□□ -0.59
USP4-204ENST00000416417 HECTD1Q9ULT8 2610 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 hCG_1818297A0A087WSY0 165 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 GLYATL1P3A0A0U1RQE8 302 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 HMGCLP35914 325 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 MAGEA1P43355 309 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 ARCN1P48444 511 aaKnown RBP11.34□□□□□ -0.59
USP4-204ENST00000416417 SLC1A5Q15758 541 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 SLC14A2Q15849 920 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 GPRC6AQ5T6X5 926 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 AGAP9Q5VTM2 703 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 FAM199XQ6PEV8 388 aaPredicted RBP11.34□□□□□ -0.59
USP4-204ENST00000416417 AMZ2Q86W34 360 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 AVL9Q8NBF6 648 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 APOBEC4Q8WW27 367 aaKnown RBP11.34□□□□□ -0.59
USP4-204ENST00000416417 P3H4Q92791 437 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 PPM1MQ96MI6 270 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 NRTNQ99748 197 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 GORASP1Q9BQQ3 440 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 FICDQ9BVA6 458 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 TRIT1Q9H3H1 467 aaKnown RBP11.34□□□□□ -0.59
USP4-204ENST00000416417 IMP3Q9NV31 184 aaKnown RBP11.34□□□□□ -0.59
USP4-204ENST00000416417 RSPH14Q9UHP6 348 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 TP53TG5Q9Y2B4 290 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 COL12A1Q99715 3063 aa11.34□□□□□ -0.59
USP4-204ENST00000416417 ZNF106Q9H2Y7 1883 aaKnown RBP11.33□□□□□ -0.6
USP4-204ENST00000416417 CDC14CA4D256 554 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 AKR1B15C9JRZ8 316 aaPredicted RBP11.33□□□□□ -0.6
USP4-204ENST00000416417 NTRK1P04629 796 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 EBLN1P0CF75 366 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 VCLP18206 1134 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 RBL1P28749 1068 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 AKT1P31749 480 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 HALP42357 657 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 NR2C2P49116 596 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 RPS18P62269 152 aaKnown RBP11.33□□□□□ -0.6
USP4-204ENST00000416417 FNBP1LQ5T0N5 605 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 PWWP2BQ6NUJ5 590 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 WASH2PQ6VEQ5 465 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 PRSS42Q7Z5A4 293 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 LILRA3Q8N6C8 439 aaPredicted RBP11.33□□□□□ -0.6
USP4-204ENST00000416417 SPDYE1Q8NFV5 336 aaPredicted RBP11.33□□□□□ -0.6
USP4-204ENST00000416417 CT55Q8WUE5 264 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 KLHL6Q8WZ60 621 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 ZDHHC12Q96GR4 267 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 QKIQ96PU8 341 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP4-204ENST00000416417 FCRL5Q96RD9 977 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 INSM2Q96T92 566 aaPredicted RBP11.33□□□□□ -0.6
USP4-204ENST00000416417 MAP3K3Q99759 626 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 EFHD1Q9BUP0 239 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 WWP1Q9H0M0 922 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 TSPY26PQ9H489 355 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 WASH6PQ9NQA3 447 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 KCNMB2Q9Y691 235 aa11.33□□□□□ -0.6
USP4-204ENST00000416417 H7C0C1 242 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 CCL22O00626 93 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 PSTPIP1O43586 416 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 ZRANB2O95218 330 aaKnown RBP eCLIP11.32□□□□□ -0.6
USP4-204ENST00000416417 FGF5P12034 268 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 NELFEP18615 380 aaKnown RBP11.32□□□□□ -0.6
USP4-204ENST00000416417 FECHP22830 423 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 TNNT3P45378 269 aaPredicted RBP11.32□□□□□ -0.6
USP4-204ENST00000416417 ATP5OP48047 213 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 TMPRSS15P98073 1019 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 TBX2Q13207 712 aaPredicted RBP11.32□□□□□ -0.6
USP4-204ENST00000416417 TUBB3Q13509 450 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 MAP7Q14244 749 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 PLCL1Q15111 1095 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 TFDP3Q5H9I0 405 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 BZW1Q7L1Q6 419 aaKnown RBP11.32□□□□□ -0.6
USP4-204ENST00000416417 DAAM2Q86T65 1068 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 PPP1R3BQ86XI6 285 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 SIDT2Q8NBJ9 832 aaKnown RBP11.32□□□□□ -0.6
USP4-204ENST00000416417 DDHD1Q8NEL9 900 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 BRSK1Q8TDC3 778 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 TRABDQ9H4I3 376 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 FAM96AQ9H5X1 160 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 FKBPLQ9UIM3 349 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 TUBD1Q9UJT1 453 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 INTUQ9ULD6 942 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 PLAAQ9Y263 795 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 PKP3Q9Y446 797 aa11.32□□□□□ -0.6
USP4-204ENST00000416417 PIPSLA2A3N6 862 aa11.31□□□□□ -0.6
USP4-204ENST00000416417 OR6C74A6NCV1 312 aa11.31□□□□□ -0.6
USP4-204ENST00000416417 STX7O15400 261 aaKnown RBP11.31□□□□□ -0.6
USP4-204ENST00000416417 TOX3O15405 576 aaPredicted RBP11.31□□□□□ -0.6
USP4-204ENST00000416417 DNAJB5O75953 348 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms