RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ZNF318Q5VUA4 2279 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 ABCA7Q8IZY2 2146 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 GLYATL1P3A0A0U1RQE8 302 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 PRAMEF26H0Y7S4 382 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 ALOX15P16050 662 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-204ENST00000409441 AKT2P31751 481 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 DHPSP49366 369 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-204ENST00000409441 AQP5P55064 265 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 DCDC1P59894 354 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 ABCE1P61221 599 aaKnown RBP13.26□□□□□ -0.29
LIMS1-204ENST00000409441 XIAPP98170 497 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 TCF15Q12870 199 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 INPP5AQ14642 412 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 SMAD1Q15797 465 aaKnown RBP13.26□□□□□ -0.29
LIMS1-204ENST00000409441 CHRNA6Q15825 494 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 WDR45BQ5MNZ6 344 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 PNCKQ6P2M8 343 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 FAM151BQ6UXP7 276 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 ZCCHC23Q6ZST2 131 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 GALNT7Q86SF2 657 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 RGL4Q8IZJ4 473 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 PELI3Q8N2H9 469 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 PLA2G15Q8NCC3 412 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 C2CD4AQ8NCU7 369 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-204ENST00000409441 PRSS33Q8NF86 280 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 OR6P1Q8NGX9 317 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 DNASE2BQ8WZ79 361 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 UTP4Q969X6 686 aaKnown RBP13.26□□□□□ -0.29
LIMS1-204ENST00000409441 ATXN7L3BQ96GX2 97 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 SPATA16Q9BXB7 569 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 TBC1D10AQ9BXI6 508 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 C20orf27Q9GZN8 174 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 MIR1-1HGQ9H1L0 117 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 NMRAL1Q9HBL8 299 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 FBXO6Q9NRD1 293 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-204ENST00000409441 ARL8BQ9NVJ2 186 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 DNAJC28Q9NX36 388 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-204ENST00000409441 APPL1Q9UKG1 709 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 SLC39A10Q9ULF5 831 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 CA5BQ9Y2D0 317 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 STK38LQ9Y2H1 464 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 HS3ST3A1Q9Y663 406 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 TRPM6Q9BX84 2022 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 EML5Q05BV3 1969 aa13.26□□□□□ -0.29
LIMS1-204ENST00000409441 CCDC162PA2VCL2 907 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 H7C0S8 307 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 K7ESM1 405 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 FPGTO14772 594 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 SRP72O76094 671 aaKnown RBP13.25□□□□□ -0.29
LIMS1-204ENST00000409441 VAPBO95292 243 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 AHSGP02765 367 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 PCCBP05166 539 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 SERPINA6P08185 405 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 CRABP2P29373 138 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 MC4RP32245 332 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 GPR1P46091 355 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 CLDN2P57739 230 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 PRAMEP78395 509 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 PEX6Q13608 980 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 USP10Q14694 798 aaKnown RBP13.25□□□□□ -0.29
LIMS1-204ENST00000409441 IRF4Q15306 451 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 HENMT1Q5T8I9 393 aaKnown RBP13.25□□□□□ -0.29
LIMS1-204ENST00000409441 LYSMD4Q5XG99 296 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 ZC3H14Q6PJT7 736 aaKnown RBP13.25□□□□□ -0.29
LIMS1-204ENST00000409441 PRR23BQ6ZRT6 265 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 PLD6Q8N2A8 252 aaKnown RBP13.25□□□□□ -0.29
LIMS1-204ENST00000409441 TRAM1L1Q8N609 369 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 DENND6BQ8NEG7 585 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 DTX3LQ8TDB6 740 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 BMFQ96LC9 184 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 PHF12Q96QT6 1004 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 ZSCAN5AQ9BUG6 496 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 ZNF395Q9H8N7 513 aaPredicted RBP13.25□□□□□ -0.29
LIMS1-204ENST00000409441 CAB39LQ9H9S4 337 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 NFKBIL1Q9UBC1 381 aaPredicted RBP13.25□□□□□ -0.29
LIMS1-204ENST00000409441 DNAJC16Q9Y2G8 782 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 SLCO1B1Q9Y6L6 691 aa13.25□□□□□ -0.29
LIMS1-204ENST00000409441 POM121BA6NF01 834 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 G3V2L1 256 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 GAPDHSO14556 408 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ITM2AO43736 263 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 TRIM13O60858 407 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ESRRAP11474 423 aaPredicted RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 UGT1A6P19224 532 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 UGT1A1P22309 533 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 UGT1A4P22310 534 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ITPKAP23677 461 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 CCND1P24385 295 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ARNTP27540 789 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 UGT1A3P35503 534 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 UGT1A5P35504 534 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 CD151P48509 253 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 KPNA2P52292 529 aaKnown RBP13.24□□□□□ -0.29
LIMS1-204ENST00000409441 HK2P52789 917 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 RAB10P61026 200 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 TSNAXIP1Q2TAA8 658 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 WASHC2DQ5SRD0 308 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 RAET1GQ6H3X3 334 aa13.24□□□□□ -0.29
LIMS1-204ENST00000409441 ZYG11AQ6WRX3 759 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms