RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 OR7A17O14581 309 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 SYNCRIPO60506 623 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 CLDN7O95471 211 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 CAPN1P07384 714 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 FAM58BPP0C7Q3 252 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 BMP2P12643 396 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 ITGB6P18564 788 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 IL12AP29459 219 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 HNF1BP35680 557 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 SLC30A9Q6PML9 568 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 SLC39A5Q6ZMH5 540 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 ERMP1Q7Z2K6 904 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 SATL1Q86VE3 508 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 RBFAQ8N0V3 343 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 TMEM199Q8N511 208 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 CLDN19Q8N6F1 224 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 FNDC5Q8NAU1 212 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 SPDYE1Q8NFV5 336 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 LKAAEAR1Q8TD35 194 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 ACDQ96AP0 544 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 MRPL17Q9NRX2 175 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 PLK2Q9NYY3 685 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 ZIM2Q9NZV7 527 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 CCDC154A6NI56 674 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 FFAR2O15552 330 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 TNFAIP8O95379 198 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 UGT1A6P19224 532 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 UGT1A1P22309 533 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 UGT1A4P22310 534 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 UGT1A3P35503 534 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 UGT1A5P35504 534 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 ATP6AP1LQ52LC2 224 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 RABL3Q5HYI8 236 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 IYDQ6PHW0 289 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 DDX53Q86TM3 631 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 GALNT15Q8N3T1 639 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 SFRP1Q8N474 314 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 PROKR1Q8TCW9 393 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 C17orf80Q9BSJ5 609 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 SLAMF8Q9P0V8 285 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 GNPTGQ9UJJ9 305 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 OGDHLQ9ULD0 1010 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 TRIM17Q9Y577 477 aa20.54■□□□□ 0.88
CCDC88B-203ENST00000359902 DHRS12A0PJE2 317 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 FAM234BA2RU67 622 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 AKAP10O43572 662 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 ZNF821O75541 412 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 CSNK1DP48730 415 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 HTR6P50406 440 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 GTF2H2Q13888 395 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 GTF2H2CQ6P1K8 395 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 ITIH5Q86UX2 942 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 CHERPQ8IWX8 916 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 PDPRQ8NCN5 879 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 C19orf43Q9BQ61 176 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 SPG21Q9NZD8 308 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 LEF1Q9UJU2 399 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 TRBV5-4A0A0C4DH59 114 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 ARPC2O15144 300 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 RAD51BO15315 384 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 SLC25A14O95258 325 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 TFAP2AP05549 437 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 BPIP17213 487 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 CKMT2P17540 419 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 GSTT1P30711 240 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 ARL1P40616 181 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 GSK3BP49841 420 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 CYP4F8P98187 520 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 CREB5Q02930 508 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 PRKCQQ04759 706 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 LMAN2Q12907 356 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 TRIM60Q495X7 471 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 GAREM2Q75VX8 874 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 KIAA2013Q8IYS2 634 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 GOLM1Q8NBJ4 401 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 OR4F6Q8NGB9 312 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 OSBPL11Q9BXB4 747 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 TNKS2Q9H2K2 1166 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 NSUN3Q9H649 340 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 TMEM45AQ9NWC5 275 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 LSM7Q9UK45 103 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 PTBP2Q9UKA9 531 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 AURKCQ9UQB9 309 aa20.53■□□□□ 0.88
CCDC88B-203ENST00000359902 TEX28O15482 410 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 TAPBPO15533 448 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 HNRNPRO43390 633 aaKnown RBP20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 CLPTM1O96005 669 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 S100BP04271 92 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 PSMC3P17980 439 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 ITGALP20701 1170 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 ACRV1P26436 265 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 GABRR2P28476 465 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 INPP5AQ14642 412 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 TBCELQ5QJ74 424 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 IL27RAQ6UWB1 636 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 ZBTB49Q6ZSB9 765 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 HTR3DQ70Z44 454 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 BBS7Q8IWZ6 715 aa20.52■□□□□ 0.88
CCDC88B-203ENST00000359902 ALG2Q9H553 416 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms