RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PABPC1LQ4VXU2 614 aaKnown RBP19.1■□□□□ 0.65
COL9A3-201ENST00000343916 ARHGAP22Q7Z5H3 698 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 NMD3Q96D46 503 aaKnown RBP19.1■□□□□ 0.65
COL9A3-201ENST00000343916 DUS3LQ96G46 650 aaKnown RBP19.1■□□□□ 0.65
COL9A3-201ENST00000343916 ZNF558Q96NG5 402 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 TMEM74Q96NL1 305 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 ZNF382Q96SR6 550 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 IL26Q9NPH9 171 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 PCDHA9Q9Y5H5 950 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 COMMD3-BMI1R4GMX3 469 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 A0A1B0GTW7 788 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 GFRA2O00451 464 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 NRG2O14511 850 aaPredicted RBP19.1■□□□□ 0.65
COL9A3-201ENST00000343916 SYNCRIPO60506 623 aaKnown RBP19.1■□□□□ 0.65
COL9A3-201ENST00000343916 OXTRP30559 389 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 PPP3CCP48454 512 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 HSPA13P48723 471 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 AP1S1P61966 158 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 ERVK-8P63133 956 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 BCL2L1Q07817 233 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 SLC5A9Q2M3M2 681 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 PLA2G4EQ3MJ16 856 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 TRIM60Q495X7 471 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 IL27RAQ6UWB1 636 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 GOLGA7Q7Z5G4 137 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 METTL6Q8TCB7 284 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 DIS3LQ8TF46 1054 aaKnown RBP19.1■□□□□ 0.65
COL9A3-201ENST00000343916 EFHD1Q9BUP0 239 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 TLR9Q9NR96 1032 aa19.1■□□□□ 0.65
COL9A3-201ENST00000343916 CNOT11Q9UKZ1 510 aaKnown RBP19.1■□□□□ 0.65
COL9A3-201ENST00000343916 CCDC154A6NI56 674 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 CKMP06732 381 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 HSD17B1P14061 328 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 GJA1P17302 382 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 GABRR2P28476 465 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 HNF1BP35680 557 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 LSAMPQ13449 338 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 NFATC2Q13469 925 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 AAK1Q2M2I8 961 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 ATP6AP1LQ52LC2 224 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 PRMT9Q6P2P2 845 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 BBS7Q8IWZ6 715 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 SFRP1Q8N474 314 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 OR4F6Q8NGB9 312 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 B4GALNT2Q8NHY0 566 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 PROKR1Q8TCW9 393 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 UHRF1Q96T88 793 aaPredicted RBP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 C2orf49Q9BVC5 232 aaPredicted RBP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 APOL5Q9BWW9 433 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 SEZ6LQ9BYH1 1024 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 BRINP2Q9C0B6 783 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 PIF1Q9H611 641 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 INTS7Q9NVH2 962 aaKnown RBP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 NUDT4Q9NZJ9 180 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 USP22Q9UPT9 525 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 OR7A17O14581 309 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 FFAR2O15552 330 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 BNIP3LO60238 219 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 SLC25A14O95258 325 aaPredicted RBP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 TRBC1P01850 177 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 NCK1P16333 377 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 ZNF7P17097 686 aaPredicted RBP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 NELFEP18615 380 aaKnown RBP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 GDF5P43026 501 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 HSPA7P48741 367 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 POLR2JP52435 117 aaKnown RBP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 DEFB103AP81534 67 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 TBCELQ5QJ74 424 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 GAREM2Q75VX8 874 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 ZSWIM9Q86XI8 627 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 KIAA2013Q8IYS2 634 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 EZH1Q92800 747 aaPredicted RBP19.09■□□□□ 0.65
COL9A3-201ENST00000343916 TMEM125Q96AQ2 219 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 ZNF597Q96LX8 424 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 ABCG8Q9H221 673 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 ZMYM5Q9UJ78 669 aa19.09■□□□□ 0.65
COL9A3-201ENST00000343916 PIKFYVEQ9Y2I7 2098 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 DHRS12A0PJE2 317 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 SOCS2O14508 198 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 ARPC2O15144 300 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 TEX28O15482 410 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 CLPTM1O96005 669 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 TFAP2AP05549 437 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 FAM58BPP0C7Q3 252 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 RETSATQ6NUM9 610 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 EFL1Q7Z2Z2 1120 aaKnown RBP19.08■□□□□ 0.65
COL9A3-201ENST00000343916 TSPAN33Q86UF1 283 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 TCEAL8Q8IYN2 117 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 ALG2Q9H553 416 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 CCM2LQ9NUG4 571 aaPredicted RBP19.08■□□□□ 0.65
COL9A3-201ENST00000343916 PCDHB1Q9Y5F3 818 aa19.08■□□□□ 0.65
COL9A3-201ENST00000343916 PRRC2BQ5JSZ5 2229 aaKnown RBP19.08■□□□□ 0.64
COL9A3-201ENST00000343916 SAC3D1A6NKF1 404 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 TNFAIP8O95379 198 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 OLFM2O95897 454 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 BPIP17213 487 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 PSMC3P17980 439 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 CD70P32970 193 aa19.08■□□□□ 0.64
COL9A3-201ENST00000343916 PIK3CGP48736 1102 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms