RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 BCL10O95999 233 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 COL6A2P12110 1019 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 SERPINB1P30740 379 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 POLR2IP36954 125 aaKnown RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 RPS9P46781 194 aaKnown RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 ZXDBP98169 803 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 NR1D2Q14995 579 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 FAM98BQ52LJ0 330 aaKnown RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 ZCCHC8Q6NZY4 707 aaKnown RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 ANKS3Q6ZW76 656 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 NECAB2Q7Z6G3 386 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 MUS81Q96NY9 551 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ADGRE3Q9BY15 652 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 GSTO2Q9H4Y5 243 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 EIF3LQ9Y262 564 aaKnown RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 PHIPQ8WWQ0 1821 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ADAM12O43184 909 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 XPNPEP2O43895 674 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 B3GALT4O96024 378 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 PRDX6P30041 224 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 RECQLP46063 649 aaPredicted RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 RAD23AP54725 363 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 FPGSQ05932 587 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 MERTKQ12866 999 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 MEP1AQ16819 746 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ZNF648Q5T619 568 aaPredicted RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 GALNT18Q6P9A2 607 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 TMC5Q6UXY8 1006 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 DDX53Q86TM3 631 aaKnown RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 PGBD5Q8N414 524 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 OR2T12Q8NG77 320 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 GTF3C2Q8WUA4 911 aaPredicted RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 CEP19Q96LK0 163 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 CMTM6Q9NX76 183 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 RIMS3Q9UJD0 308 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ZNF490Q9ULM2 529 aaPredicted RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 CACNA1CQ13936 2221 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 XYLBO75191 536 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 DEAF1O75398 565 aaPredicted RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 CLDN7O95471 211 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 SLC7A1P30825 629 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 CLK1P49759 484 aaKnown RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 FCGRTP55899 365 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ANKDD1AQ495B1 522 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 AASDHQ4L235 1098 aaPredicted RBP11.8□□□□□ -0.52
USP1-201ENST00000339950 SPANXN4Q5MJ08 99 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 LRRC8DQ7L1W4 858 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 TAS1R1Q7RTX1 841 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ADCK2Q7Z695 626 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ADGRG6Q86SQ4 1221 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 SGCDQ92629 289 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 TMEM169Q96HH4 297 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 HAPLN3Q96S86 360 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 IL12RB2Q99665 862 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 ZBED2Q9BTP6 218 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 PTTG2Q9NZH5 202 aa11.8□□□□□ -0.52
USP1-201ENST00000339950 SLC7A4O43246 635 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 FGF1P05230 155 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 KRT8P05787 483 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 FMO3P31513 532 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 HECTD3Q5T447 861 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 MSANTD2Q6P1R3 559 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 ZNF549Q6P9A3 640 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 HORMAD1Q86X24 394 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 C12orf43Q96C57 262 aaKnown RBP11.79□□□□□ -0.52
USP1-201ENST00000339950 ITM2CQ9NQX7 267 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 LEF1Q9UJU2 399 aaPredicted RBP11.79□□□□□ -0.52
USP1-201ENST00000339950 WNK3Q9BYP7 1800 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 INSIG1O15503 277 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 DUSP11O75319 330 aaKnown RBP11.79□□□□□ -0.52
USP1-201ENST00000339950 UGT2B4P06133 528 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 CD1DP15813 335 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 SLC5A2P31639 672 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 INHBCP55103 352 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 FGD3Q5JSP0 725 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 LDLRAD1Q5T700 205 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 PM20D1Q6GTS8 502 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 CLEC14AQ86T13 490 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 TMEM173Q86WV6 379 aaPredicted RBP11.79□□□□□ -0.52
USP1-201ENST00000339950 BRSK1Q8TDC3 778 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 PRICKLE1Q96MT3 831 aaPredicted RBP11.79□□□□□ -0.52
USP1-201ENST00000339950 SMOC2Q9H3U7 446 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 GIMAP4Q9NUV9 329 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 TRIM17Q9Y577 477 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 FOCADQ5VW36 1801 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 PRKD3O94806 890 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 OPN1SWP03999 348 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 ITGALP20701 1170 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 ARHGDIAP52565 204 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 CYP4F8P98187 520 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 RTP2Q5QGT7 225 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 CACHD1Q5VU97 1274 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 ABRAXAS1Q6UWZ7 409 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 SERPINA9Q86WD7 417 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 FUNDC1Q8IVP5 155 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 LIX1Q8N485 282 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 OR4F6Q8NGB9 312 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 BIRC7Q96CA5 298 aa11.79□□□□□ -0.52
USP1-201ENST00000339950 IMP4Q96G21 291 aaKnown RBP11.79□□□□□ -0.52
USP1-201ENST00000339950 DNMT3LQ9UJW3 386 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms