RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 HLA-DQA1Q5Y7H0 255 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 CDCA2Q69YH5 1023 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 HACD2Q6Y1H2 254 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ZC3H7AQ8IWR0 971 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC22A17Q8WUG5 538 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 PIK3R5Q8WYR1 880 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 GPR20Q99678 358 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 BCO2Q9BYV7 579 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 LMAN2LQ9H0V9 348 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 E7ENX8 843 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 PGRP06401 933 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 GBE1Q04446 702 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 TSTD2Q5T7W7 516 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ATG14Q6ZNE5 492 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 CHST15Q7LFX5 561 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 DSN1Q9H410 356 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 DENRO43583 198 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ZBTB11O95625 1053 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 INCA1Q0VD86 236 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 MOGSQ13724 837 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 SPPL2CQ8IUH8 684 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ERMAPQ96PL5 475 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 RMI1Q9H9A7 625 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF451Q9Y4E5 1061 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 TNRC6CQ9HCJ0 1690 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 CLK3P49761 638 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 LARS2Q15031 903 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 EGFLAMQ63HQ2 1017 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 LRRC70Q7Z2Q7 622 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 RASAL3Q86YV0 1011 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 C12orf29Q8N999 325 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 NARS2Q96I59 477 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 GPR22Q99680 433 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 RUVBL1Q9Y265 456 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 AP1M2Q9Y6Q5 423 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 GLYATL1P3A0A0U1RQE8 302 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 A0A1B0GVM2 712 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 TCAF2A6NFQ2 919 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 MAGEB17A8MXT2 336 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 KCNU1A8MYU2 1149 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 MRPS14O60783 128 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ATF6P18850 670 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 CBX3Q13185 183 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 NOMO2Q5JPE7 1267 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 BEND5Q7L4P6 421 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 TMEM110Q86TL2 294 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 RANBP3LQ86VV4 465 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 C1orf127Q8N9H9 656 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 TTLL2Q9BWV7 592 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 POFUT2Q9Y2G5 429 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 IRAK2O43187 625 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 DLDP09622 509 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 EPORP19235 508 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 HSPA14Q0VDF9 509 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 C17orf64Q86WR6 236 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 TRAPPC5Q8IUR0 188 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 KBTBD2Q8IY47 623 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 IL31RAQ8NI17 732 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 RERGQ96A58 199 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ITPKCQ96DU7 683 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ASAH2Q9NR71 780 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC27A6Q9Y2P4 619 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 NPEPPSL1A6NEC2 478 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 RIIAD1A6NNX1 92 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 CASKO14936 926 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ADH1CP00326 375 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 CYP11A1P05108 521 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 CXCR3P49682 368 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 GALK1P51570 392 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC25A11Q02978 314 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 MTAPQ13126 283 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ERMP1Q7Z2K6 904 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 OMDQ99983 421 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ATXN3LQ9H3M9 355 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 C14orf105Q9NVL8 296 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 C1orf109Q9NX04 203 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 PCDHGA11Q9Y5H2 935 aa10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 ARHGEF33A8MVX0 844 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 CELF2O95319 508 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 FADS2O95864 444 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 EPOP01588 193 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 MMP3P08254 477 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 GNAZP19086 355 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ALDH3A2P51648 485 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ARFIP1P53367 373 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF45Q02386 682 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 GPR33Q49SQ1 333 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF773Q6PK81 442 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 MARVELD2Q8N4S9 558 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 USP29Q9HBJ7 922 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 EGFL7Q9UHF1 273 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PCDHGB7Q9Y5F8 929 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 COL1A1P02452 1464 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 TRPM3Q9HCF6 1732 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 TNFRSF11BO00300 401 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 CXCR6O00574 342 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PDCD5O14737 125 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 CCNB2O95067 398 aa10.17□□□□□ -0.78
CCDC88A-202ENST00000336838 PRPS1L1P21108 318 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms