RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PCDHGB3Q9Y5G1 929 aa12.51□□□□□ -0.41
SDC3-201ENST00000336798 FABP3P05413 133 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 GRM5P41594 1212 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 CCR10P46092 362 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 MMP14P50281 582 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 IL17AQ16552 155 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 ALG1LQ6GMV1 187 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 LIX1Q8N485 282 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 TTC29Q8NA56 475 aaPredicted RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 EFHD2Q96C19 240 aaPredicted RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 SIPA1Q96FS4 1042 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 UBIAD1Q9Y5Z9 338 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 RIIAD1A6NNX1 92 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 A8MUI8 341 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 CLDN4O14493 209 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 UROSP10746 265 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 FAUP35544 74 aaKnown RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 CDKL1Q00532 357 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 ARSJQ5FYB0 599 aaPredicted RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 ATAT1Q5SQI0 421 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 ATXN7L2Q5T6C5 722 aaPredicted RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 PYROXD2Q8N2H3 581 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 TOP6BLQ8N6T0 577 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 SLC25A36Q96CQ1 311 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 BRD7Q9NPI1 651 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 SAMD4AQ9UPU9 718 aaKnown RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 A8MU76 341 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 TACR2P21452 398 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 GNPDA1P46926 289 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 SP2Q02086 613 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 PDK4Q16654 411 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 XKR4Q5GH76 650 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 RNF43Q68DV7 783 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 PHF13Q86YI8 300 aaPredicted RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 MCFD2Q8NI22 146 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 HMCESQ96FZ2 354 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 RBM18Q96H35 190 aaKnown RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 IL12RB2Q99665 862 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 YIPF4Q9BSR8 244 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 CLK4Q9HAZ1 481 aaKnown RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 PNPLA3Q9NST1 481 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 CD247P20963 164 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 RPIAP49247 311 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 PRSS55Q6UWB4 352 aaPredicted RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 TMC8Q8IU68 726 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 BTN2A3PQ96KV6 586 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 CHIAQ9BZP6 476 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 CST11Q9H112 138 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 TOR3AQ9H497 397 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 ARL8BQ9NVJ2 186 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 COPS7AQ9UBW8 275 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 PCYOX1Q9UHG3 505 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 PTCH2Q9Y6C5 1203 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 PLGP00747 810 aaPredicted RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 IST1P53990 364 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 INHBEP58166 350 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 GTF2H2Q13888 395 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 SPDYCQ5MJ68 293 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 IL23RQ5VWK5 629 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 GTF2H2CQ6P1K8 395 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 TMEM220Q6QAJ8 160 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 AHSA2Q719I0 299 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 DGLUCYQ7Z3D6 616 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 ZBTB8BQ8NAP8 495 aaPredicted RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 ZNF224Q9NZL3 707 aa12.5□□□□□ -0.41
SDC3-201ENST00000336798 CCDC59Q9P031 241 aaKnown RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 GNEQ9Y223 722 aaKnown RBP12.5□□□□□ -0.41
SDC3-201ENST00000336798 OR6C75A6NL08 312 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 SPATA31C2B4DYI2 1134 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 SMAD9O15198 467 aaKnown RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 DHX15O43143 795 aaKnown RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 PKMP14618 531 aaKnown RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 AP1S2P56377 157 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 TSPAN5P62079 268 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 PUS10Q3MIT2 529 aaKnown RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 RDH11Q8TC12 318 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 BSNDQ8WZ55 320 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 DIRAS2Q96HU8 199 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 BCKDKO14874 412 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 CLDN11O75508 207 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 CLDN9O95484 217 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 PUM1Q14671 1186 aaKnown RBP eCLIP12.49□□□□□ -0.411e-6■■■■■ 27.6
SDC3-201ENST00000336798 ATP13A5Q4VNC0 1218 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 HAVCR1Q96D42 359 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 ZNF570Q96NI8 536 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 SRMSQ9H3Y6 488 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 HCN3Q9P1Z3 774 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 DPPA5A6NC42 116 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 HMGB3O15347 200 aaKnown RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 ZNF8P17098 575 aaPredicted RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 KCNJ5P48544 419 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 CDH12P55289 794 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 SGCBQ16585 318 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 CYP27C1Q4G0S4 372 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 DCST1Q5T197 706 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 ARCQ7LC44 396 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 CPSF7Q8N684 471 aaKnown RBP12.49□□□□□ -0.41
SDC3-201ENST00000336798 OR10H4Q8NGA5 316 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 NFATC1O95644 943 aa12.49□□□□□ -0.41
SDC3-201ENST00000336798 KIR3DL1P43629 444 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms