RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PRR19A6NJB7 356 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 C1QTNF9BB2RNN3 333 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 QSOX1O00391 747 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 AP2A2O94973 939 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 CPNE6O95741 557 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 VIPP01282 170 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 PROS1P07225 676 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 GSTM1P09488 218 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 C1QTNF9P0C862 333 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 PRSS56P0CW18 603 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 FOXN2P32314 431 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 PTGIRP43119 386 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 GPLD1P80108 840 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 DR1Q01658 176 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 GSTM4Q03013 218 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 SQSTM1Q13501 440 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 PTK6Q13882 451 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 SEPT7Q16181 437 aaKnown RBP13.76□□□□□ -0.21
LIMS1-201ENST00000332345 DBN1Q16643 649 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 AMZ1Q400G9 498 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 AARS2Q5JTZ9 985 aaKnown RBP13.76□□□□□ -0.21
LIMS1-201ENST00000332345 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.76□□□□□ -0.21
LIMS1-201ENST00000332345 ANKRD22Q5VYY1 191 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 CASC4Q6P4E1 433 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 ZNF449Q6P9G9 518 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 ZNF534Q76KX8 674 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 CAND1Q86VP6 1230 aaKnown RBP13.76□□□□□ -0.21
LIMS1-201ENST00000332345 CFAP206Q8IYR0 622 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 NAT8LQ8N9F0 302 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 AHCYL2Q96HN2 611 aaKnown RBP13.76□□□□□ -0.21
LIMS1-201ENST00000332345 TMEM74Q96NL1 305 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 DPYSL5Q9BPU6 564 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 CCM2Q9BSQ5 444 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 STRADBQ9C0K7 418 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 CCDC86Q9H6F5 360 aaKnown RBP13.76□□□□□ -0.21
LIMS1-201ENST00000332345 KCNK4Q9NYG8 393 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 SOX13Q9UN79 622 aa13.76□□□□□ -0.21
LIMS1-201ENST00000332345 ACACBO00763 2458 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 ASPMQ8IZT6 3477 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 GOLGA8MH3BSY2 632 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 SGTAO43765 313 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 AVILO75366 819 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 PAMP19021 973 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 NMBRP28336 390 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 CD1CP29017 333 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 PBLDP30039 288 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 SLC19A1P41440 591 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 PPM1FP49593 454 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 PRLHRP49683 370 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 DRG2P55039 364 aaKnown RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 DHX34Q14147 1143 aaKnown RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 NFE2L1Q14494 772 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 RTP5Q14D33 572 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 USP53Q70EK8 1073 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 RBM12BQ8IXT5 1001 aaKnown RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 OR10G6Q8NH81 332 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 CXorf40BQ96DE9 158 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 NXPE2Q96DL1 559 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 TRIM44Q96DX7 344 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 TMEM121BQ9BXQ6 578 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 UCK1Q9HA47 277 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 TREX1Q9NSU2 369 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 CATSPERZQ9NTU4 200 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 SYBUQ9NX95 663 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 SCHIP1Q9P0W5 487 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 ZNF624Q9P2J8 865 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 ATXN7L1Q9ULK2 861 aaPredicted RBP13.75□□□□□ -0.21
LIMS1-201ENST00000332345 ENTPD2Q9Y5L3 495 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 AK5Q9Y6K8 562 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 CHD8Q9HCK8 2581 aa13.75□□□□□ -0.21
LIMS1-201ENST00000332345 IGHV1OR21-1A0A087WYE8 117 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 D6RAR5 112 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 DNALI1O14645 258 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-201ENST00000332345 PFDN6O15212 129 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 FANCGO15287 622 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 CD3EAPO15446 510 aaKnown RBP13.74□□□□□ -0.21
LIMS1-201ENST00000332345 TMEM63AO94886 807 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 OR56A5P0C7T3 313 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 BRAFP15056 766 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 TTPAP49638 278 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 EPHA4P54764 986 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 INHBCP55103 352 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 UBE2IP63279 158 aaKnown RBP13.74□□□□□ -0.21
LIMS1-201ENST00000332345 CYP4F3Q08477 520 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 CLCA4Q14CN2 919 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 RNASEH2BQ5TBB1 312 aaKnown RBP13.74□□□□□ -0.21
LIMS1-201ENST00000332345 PACS1Q6VY07 963 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 FAM83HQ6ZRV2 1179 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-201ENST00000332345 SDCCAG8Q86SQ7 713 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-201ENST00000332345 HOOK3Q86VS8 718 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 LSMEM2Q8N112 164 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 CLDN19Q8N6F1 224 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 KDF1Q8NAX2 398 aaPredicted RBP13.74□□□□□ -0.21
LIMS1-201ENST00000332345 HM13Q8TCT9 377 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 MFSD3Q96ES6 412 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 SERPINB12Q96P63 405 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 EPB41L1Q9H4G0 881 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 POT1Q9NUX5 634 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 WDR37Q9Y2I8 494 aa13.74□□□□□ -0.21
LIMS1-201ENST00000332345 PCDHB1Q9Y5F3 818 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms