RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 C6orf183Q5T699 404 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 KLHL36Q8N4N3 616 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 UROC1Q96N76 676 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 BIRC8Q96P09 236 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SCP2D1Q9UJQ7 156 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 DNMT3LQ9UJW3 386 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 VWA7Q9Y334 891 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 ABHD14A-ACY1A0A1B0GW23 586 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 OR7A10O76100 309 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 AZGP1P25311 298 aaKnown RBP14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SSTP61278 116 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SMARCB1Q12824 385 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SCARF1Q14162 830 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SLC26A9Q7LBE3 791 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 COL26A1Q96A83 441 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 TCF25Q9BQ70 676 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 ATG13O75143 517 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 CSF1RP07333 972 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 LAMP2P13473 410 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SLC10A7Q0GE19 358 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 CFAP206Q8IYR0 622 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 RNF157Q96PX1 679 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 MMP27Q9H306 513 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 TRPV4Q9HBA0 871 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 PCDHGB5Q9Y5G0 923 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SH3D21A4FU49 640 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SLC33A1O00400 549 aaPredicted RBP14.14□□□□□ -0.15
COL7A1-201ENST00000328333 ANXA8P13928 327 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SYNE4Q8N205 404 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 EBF2Q9HAK2 575 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 DNAJB9Q9UBS3 223 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 SRCP12931 536 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 CRTC2Q53ET0 693 aaPredicted RBP14.14□□□□□ -0.15
COL7A1-201ENST00000328333 PXMP2Q9NR77 195 aa14.14□□□□□ -0.15
COL7A1-201ENST00000328333 AGR2O95994 175 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 CXCL8P10145 99 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 TXNL4AP83876 142 aaKnown RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 NCCRP1Q6ZVX7 275 aaPredicted RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 CELF6Q96J87 481 aaKnown RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 AIF1LQ9BQI0 150 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 TCF7L1Q9HCS4 588 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 CCRL2O00421 344 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 GSCP56915 257 aaPredicted RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 KLF10Q13118 480 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 POF1BQ8WVV4 589 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 SMG7Q92540 1137 aaKnown RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 CIPCQ9C0C6 399 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 C5orf51A6NDU8 294 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 TPH1P17752 444 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 MATKP42679 507 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 LIMK2P53671 638 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 GNA12Q03113 381 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 AADACL4Q5VUY2 407 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 FBXO33Q7Z6M2 555 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 C17orf64Q86WR6 236 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 GALNT12Q8IXK2 581 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 SPATA9Q9BWV2 254 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 STK16O75716 305 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 HMGN1P05114 100 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 MECP2P51608 486 aaKnown RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 CYP4F8P98187 520 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 XKR4Q5GH76 650 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 GALNTL5Q7Z4T8 443 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 ECHDC2Q86YB7 292 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 UBR7Q8N806 425 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 ASCC1Q8N9N2 400 aaKnown RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 HJURPQ8NCD3 748 aaPredicted RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 DCSTAMPQ9H295 470 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 MYNNQ9NPC7 610 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 HNRNPLP14866 589 aaKnown RBP eCLIP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 TRPM4Q8TD43 1214 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 ASB15Q8WXK1 588 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 INPP4AQ96PE3 977 aaPredicted RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 C14orf166Q9Y224 244 aaKnown RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 POFUT2Q9Y2G5 429 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 E5RJQ4 531 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 HSPA14Q0VDF9 509 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 BRMS1LQ5PSV4 323 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 LINGO1Q96FE5 620 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 TMEM134Q9H6X4 195 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 ARHGEF4Q9NR80 690 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF282Q9UDV7 671 aaPredicted RBP14.13□□□□□ -0.15
COL7A1-201ENST00000328333 FER1L4A9Z1Z3 1794 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 NEURL4Q96JN8 1562 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 NFASCO94856 1347 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 SPATA31A6Q5VVP1 1343 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 L7N2F9 121 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 KHKP50053 298 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 VAMP2P63027 116 aa14.13□□□□□ -0.15
COL7A1-201ENST00000328333 A0A1W2PQ67 120 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 CPNE3O75131 537 aaKnown RBP14.12□□□□□ -0.15
COL7A1-201ENST00000328333 GNAO1P09471 354 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 GNALP38405 381 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 SRSF11Q05519 484 aaKnown RBP14.12□□□□□ -0.15
COL7A1-201ENST00000328333 NTRK3Q16288 839 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF227Q86WZ6 799 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 DENND1CQ8IV53 801 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 SPERTQ8NA61 448 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 DCAKDQ8WVC6 231 aa14.12□□□□□ -0.15
COL7A1-201ENST00000328333 PPM1MQ96MI6 270 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms