RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 CDK5RAP1Q96SZ6 601 aaKnown RBP11.08□□□□□ -0.64
HDGFL3-201ENST00000299633 TMEM246Q9BRR3 403 aa11.08□□□□□ -0.64
HDGFL3-201ENST00000299633 MEAF6Q9HAF1 191 aa11.08□□□□□ -0.64
HDGFL3-201ENST00000299633 PIH1D1Q9NWS0 290 aaKnown RBP11.08□□□□□ -0.64
HDGFL3-201ENST00000299633 PCDHGB6Q9Y5F9 930 aa11.08□□□□□ -0.64
HDGFL3-201ENST00000299633 PIAS1O75925 651 aa11.08□□□□□ -0.64
HDGFL3-201ENST00000299633 LSM12Q3MHD2 195 aaKnown RBP11.08□□□□□ -0.64
HDGFL3-201ENST00000299633 FBXO33Q7Z6M2 555 aa11.08□□□□□ -0.64
HDGFL3-201ENST00000299633 OTOL1A6NHN0 477 aaPredicted RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 NPPAP01160 153 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 COLEC12Q5KU26 742 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF470Q6ECI4 717 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 IFT52Q9Y366 437 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZMYM2Q9UBW7 1377 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 FAM237BA0A1B0GVD1 139 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 RHPN2P1A8MT19 583 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 HHLA1C9JL84 531 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 J3QR89 54 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 VLDLRP98155 873 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 CYP2A13Q16696 494 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF767PQ75MW2 155 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF619Q8N2I2 560 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 KAT8Q9H7Z6 458 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 CA5BQ9Y2D0 317 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 SGPL1O95470 568 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ARFRP1Q13795 201 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 PTPAQ15257 358 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 MGAT5BQ3V5L5 792 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF563Q8TA94 476 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 MOB1AQ9H8S9 216 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 WDR6Q9NNW5 1121 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 COMMD3Q9UBI1 195 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 BARX2Q9UMQ3 279 aaPredicted RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ADGRB2O60241 1585 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 NPTXRO95502 500 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 NDUFB10O96000 172 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 GLDCP23378 1020 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 RPL13AP40429 203 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 LARS2Q15031 903 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 RELL1Q8IUW5 271 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 RERGQ96A58 199 aaPredicted RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZFP14Q9HCL3 533 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ODC1P11926 461 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF81P51508 661 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 EEF1A2Q05639 463 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ACSM2AQ08AH3 577 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ACSM2BQ68CK6 577 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF571Q7Z3V5 609 aaPredicted RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ETNPPLQ8TBG4 499 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 GAREM1Q9H706 876 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ATF5Q9Y2D1 282 aaPredicted RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 SPATA31A3Q5VYP0 1347 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 APOBEC3FQ8IUX4 373 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 RBM12BQ8IXT5 1001 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 TMEM159Q96B96 161 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF570Q96NI8 536 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 NT5MQ9NPB1 228 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF780BQ9Y6R6 833 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 TRAV6A0A075B6T7 132 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 TOB1P50616 345 aaPredicted RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 THOP1P52888 689 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 COMMD7Q86VX2 200 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ERI1Q8IV48 349 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 CARNMT1Q8N4J0 409 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 HPDLQ96IR7 371 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ARL5BQ96KC2 179 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF578Q96N58 590 aaPredicted RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 FADS3Q9Y5Q0 445 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ATP6V1G2-DDX39BF2Z307 99 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 RHOP08100 348 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 PTPN3P26045 913 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 PTPN9P43378 593 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 GRIA4P48058 902 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 PPP5CP53041 499 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 BLOC1S4Q9NUP1 217 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF282Q9UDV7 671 aaPredicted RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 FAM230AA0A1W2PPH8 454 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 EGFRP00533 1210 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 GALK2Q01415 458 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 FSCN1Q16658 493 aaKnown RBP11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 PQLC1Q8N2U9 271 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 OR2AP1Q8NGE2 309 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 CLIP3Q96DZ5 547 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 AGPAT3Q9NRZ7 376 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 ARL15Q9NXU5 204 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 DIP2CQ9Y2E4 1556 aa11.07□□□□□ -0.64
HDGFL3-201ENST00000299633 A0A0A6YYK5 440 aaPredicted RBP11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 SLC28A1O00337 649 aa11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 CYP1A1P04798 512 aaPredicted RBP11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF268Q14587 947 aaPredicted RBP11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 ZCCHC9Q8N567 271 aaKnown RBP11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 ZNF565Q8N9K5 539 aa11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 COLGALT1Q8NBJ5 622 aa11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 TTLL2Q9BWV7 592 aa11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 PDP1Q9P0J1 537 aaPredicted RBP11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 ADGRE2Q9UHX3 823 aa11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 MFSD11O43934 449 aa11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 AKT2P31751 481 aa11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 BOP1Q14137 746 aaKnown RBP11.06□□□□□ -0.64
HDGFL3-201ENST00000299633 USP41Q3LFD5 358 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms