RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SEPT8Q92599 483 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 DGCR14Q96DF8 476 aaKnown RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 RMND5BQ96G75 393 aaPredicted RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 DEFB118Q96PH6 123 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 FEM1AQ9BSK4 669 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 RPF2Q9H7B2 306 aaKnown RBP16.42■□□□□ 0.22
VPS54-201ENST00000272322 UTS2RQ9UKP6 389 aa16.42■□□□□ 0.22
VPS54-201ENST00000272322 FAM92AA1XBS5 289 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 SYCE1LA8MT33 242 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 ESRRBO95718 433 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 EPOP01588 193 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 IDO1P14902 403 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 NR4A1P22736 598 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 TTPAP49638 278 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 LAPTM4AQ15012 233 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 NEDD8Q15843 81 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 EPHX4Q8IUS5 362 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 VCX3AQ9NNX9 186 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 EXD2Q9NVH0 621 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 WWOXQ9NZC7 414 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 SNAP29O95721 258 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 CTSOP43234 321 aaPredicted RBP16.41■□□□□ 0.22
VPS54-201ENST00000272322 RING1Q06587 406 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 USP41Q3LFD5 358 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 FAM26DQ5JW98 314 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 NPAS4Q8IUM7 802 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 ZNF599Q96NL3 588 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 VPS4AQ9UN37 437 aa16.41■□□□□ 0.22
VPS54-201ENST00000272322 TCRBV3S1A0A5B6 114 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 E2F3O00716 465 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 INPP5AQ14642 412 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 LHX8Q68G74 356 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 PROKR1Q8TCW9 393 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 PFDN4Q9NQP4 134 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 IL37Q9NZH6 218 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 OAS3Q9Y6K5 1087 aaKnown RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 PRMT5O14744 637 aaPredicted RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 C8BP07358 591 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 ACVR1Q04771 509 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 TYSND1Q2T9J0 566 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 TBPL2Q6SJ96 375 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 PARP8Q8N3A8 854 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 NKAPQ8N5F7 415 aaKnown RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 FAM86B1Q8N7N1 296 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 TADA1Q96BN2 335 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 ULK4Q96C45 1275 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 ASIC4Q96FT7 647 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 TCF12Q99081 682 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 DUS2Q9NX74 493 aaKnown RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 MBD1Q9UIS9 605 aaPredicted RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 NLRC5Q86WI3 1866 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 H7C4K7 107 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 TMEM189-UBE2V1I3L0A0 370 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 DFNA5O60443 496 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 CR2P20023 1033 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 TUFMP49411 452 aaKnown RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 DDX39BQ13838 428 aaKnown RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 SF1Q15637 639 aaKnown RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 GOLGA7Q7Z5G4 137 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 GALNT10Q86SR1 603 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 CLVS1Q8IUQ0 354 aaPredicted RBP16.4■□□□□ 0.22
VPS54-201ENST00000272322 LMNTD1Q8N9Z9 388 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 OR10A6Q8NH74 314 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 RHEBL1Q8TAI7 183 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 OLAHQ9NV23 265 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 ZNF711Q9Y462 761 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 YIPF1Q9Y548 306 aa16.4■□□□□ 0.22
VPS54-201ENST00000272322 A0A1W2PP18 115 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 FFAR2O15552 330 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 HNRNPRO43390 633 aaKnown RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 ACADVLP49748 655 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 COL9A2Q14055 689 aaPredicted RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 MAP7Q14244 749 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 CHRNA6Q15825 494 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 IMPG1Q17R60 797 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 GLYATQ6IB77 296 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 ZNF366Q8N895 744 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 NCLNQ969V3 563 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 ZFYVE1Q9HBF4 777 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 INTS10Q9NVR2 710 aaKnown RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 MYRFQ9Y2G1 1151 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 PIKFYVEQ9Y2I7 2098 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 ILVBLA1L0T0 632 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 AXIN1O15169 862 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 CLOCKO15516 846 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 NOBOXO60393 691 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 SEC22BO75396 215 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 FGF4P08620 206 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 UROSP10746 265 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 PRKACGP22612 351 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 DNAJB1P25685 340 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 TM4SF4P48230 202 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 ATP6V0D1P61421 351 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 BOP1Q14137 746 aaKnown RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 FAM174BQ3ZCQ3 159 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 ZNF648Q5T619 568 aaPredicted RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 STK32CQ86UX6 486 aa16.39■□□□□ 0.21
VPS54-201ENST00000272322 CHERPQ8IWX8 916 aaKnown RBP16.39■□□□□ 0.21
VPS54-201ENST00000272322 TMEM125Q96AQ2 219 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms