RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 UNKLQ9H9P5 680 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 MSRAQ9UJ68 235 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF490Q9ULM2 529 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 CFL2Q9Y281 166 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 QRICH2Q9H0J4 1663 aa13.81□□□□□ -0.2
CCDC88A-201ENST00000263630 GLI1P08151 1106 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CEP68Q76N32 757 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CYP2U1Q7Z449 544 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 TMPRSS11BQ86T26 416 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 ASB7Q9H672 318 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 FAM237BA0A1B0GVD1 139 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CAPZA1P52907 286 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 MERTKQ12866 999 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 SAMD14Q8IZD0 417 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 KCTD7Q96MP8 289 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 STRA6Q9BX79 667 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 PCBD2Q9H0N5 130 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 DENND2DQ9H6A0 471 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 LRTM1Q9HBL6 345 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 SERINC1Q9NRX5 453 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CAPN6Q9Y6Q1 641 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 GMFGO60234 142 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 GRIA1P42261 906 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC22A15Q8IZD6 547 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 EIF4BP23588 611 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 LCN1P31025 176 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 MMP14P50281 582 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 NAE1Q13564 534 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 ZC3HC1Q86WB0 502 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 DNERQ8NFT8 737 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CPT1CQ8TCG5 803 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CLPTM1LQ96KA5 538 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 OR12D3Q9UGF7 316 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 NOP16Q9Y3C1 178 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 GPIP06744 558 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CMPK1P30085 196 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 POLR2HP52434 150 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 KLHL36Q8N4N3 616 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 EFCAB6Q5THR3 1501 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 WSCD2Q2TBF2 565 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 UBAP2Q5T6F2 1119 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CPSF7Q8N684 471 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 OR4L1Q8NH43 312 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 ATG10Q9H0Y0 220 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 PLD2O14939 933 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 GABRB2P47870 512 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 AVPR1BP47901 424 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 UNC5BQ8IZJ1 945 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 PIH1D1Q9NWS0 290 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 TM7SF2O76062 418 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 LATS1O95835 1130 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 ALAS2P22557 587 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC9A3P48764 834 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 XKRXQ6PP77 449 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 ASB18Q6ZVZ8 466 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 IGDCC4Q8TDY8 1250 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 FBXO6Q9NRD1 293 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 PCDHB1Q9Y5F3 818 aa13.8□□□□□ -0.2
CCDC88A-201ENST00000263630 CPNE3O75131 537 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 RAB36O95755 333 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 FGF1P05230 155 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 CRYBG2Q8N1P7 616 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF717Q9BY31 904 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 TOR3AQ9H497 397 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 GAKO14976 1311 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 MAPK12P53778 367 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ANGEL2Q5VTE6 544 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 P4HA3Q7Z4N8 544 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF101Q8IZC7 436 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 FAM151AQ8WW52 585 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF606Q8WXB4 792 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 KCTD15Q96SI1 283 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 SCP2D1Q9UJQ7 156 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 PBRM1Q86U86 1689 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 PRAMEF22A3QJZ6 481 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 OR6C70A6NIJ9 312 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 M0QX08 132 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ETS2P15036 469 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 HLFQ16534 295 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 PHC2Q8IXK0 858 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC5A5Q92911 643 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 RCN3Q96D15 328 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 BRD7Q9NPI1 651 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 PACSIN3Q9UKS6 424 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 BTRCQ9Y297 605 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 MAB21L2Q9Y586 359 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 ANKRD33BA6NCL7 494 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 TTLL8A6PVC2 850 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 DISC1C4P0D8 188 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC22A1O15245 554 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 FAM86B2P0C5J1 330 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 UNC5AQ6ZN44 842 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 DEFB128Q7Z7B8 93 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 AMIGO2Q86SJ2 522 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 GPAT4Q86UL3 456 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 OR6K6Q8NGW6 343 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 CCDC120Q96HB5 630 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 SNTG2Q9NY99 539 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 LOC100509620A0A075B734 347 aa13.79□□□□□ -0.2
CCDC88A-201ENST00000263630 OTOL1A6NHN0 477 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms