RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 FFAR2O15552 330 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 OR1I1O60431 355 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ECI2O75521 394 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 UNC5CO95185 931 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SLC35E2BP0CK96 405 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 IMPDH1P20839 514 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ITPKAP23677 461 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 GJA4P35212 333 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 MNX1P50219 401 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-201ENST00000254950 PLIN5Q00G26 463 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SQLEQ14534 574 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 NAPRTQ6XQN6 538 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 KBTBD6Q86V97 674 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 TRAM1L1Q8N609 369 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SP7Q8TDD2 431 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-201ENST00000254950 EEF1AKMT1Q8WVE0 214 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 TMEM237Q96Q45 408 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 BTBD1Q9H0C5 482 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 ATG10Q9H0Y0 220 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SYNDIG1Q9H7V2 258 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SLC13A4Q9UKG4 626 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 SLC27A6Q9Y2P4 619 aa11.44□□□□□ -0.58
VPS4A-201ENST00000254950 CDC7O00311 574 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 SLC28A1O00337 649 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 AP2A2O94973 939 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 CBSLP0DN79 551 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 CBSP35520 551 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 HERVK_113P63132 956 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 SPDYE7PQ495Y7 208 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 DENND5AQ6IQ26 1287 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 Q6ZNB5 142 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 C11orf96Q7Z7L8 435 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 DEFB107AQ8IZN7 70 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 CBARPQ8N350 705 aaPredicted RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 GLYATL1Q969I3 302 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 RAD51AP1Q96B01 352 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 ZSWIM3Q96MP5 696 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 ECSITQ9BQ95 431 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 CCDC28BQ9BUN5 200 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 ERVK-6Q9BXR3 956 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 ASPSCR1Q9BZE9 553 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 NOL11Q9H8H0 719 aaKnown RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 DNAJC28Q9NX36 388 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 SIRPGQ9P1W8 387 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 CLCA2Q9UQC9 943 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 RGSL1A5PLK6 1076 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 ANKDD1BA6NHY2 528 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 TSPAN6O43657 245 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 GJB3O75712 270 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 LINC00032P0C843 101 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 SLC6A11P48066 632 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 PTK2BQ14289 1009 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 INPP5AQ14642 412 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 RNF168Q8IYW5 571 aaPredicted RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 DENND1AQ8TEH3 1009 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 ESAMQ96AP7 390 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 MTFMTQ96DP5 389 aaKnown RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 MYEOVQ96EZ4 313 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 PLEKHG4BQ96PX9 1271 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 CCM2Q9BSQ5 444 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 THUMPD3Q9BV44 507 aaKnown RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 NMUR2Q9GZQ4 415 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 WDR41Q9HAD4 459 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 GIMAP4Q9NUV9 329 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 NPIPB15A6NHN6 443 aaPredicted RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 IL10P22301 178 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 LRRC32Q14392 662 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 C5orf22Q49AR2 442 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 AASDHQ4L235 1098 aaPredicted RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 CHST15Q7LFX5 561 aaPredicted RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 CLNKQ7Z7G1 428 aa11.43□□□□□ -0.58
VPS4A-201ENST00000254950 YBX2Q9Y2T7 364 aaKnown RBP11.43□□□□□ -0.58
VPS4A-201ENST00000254950 A0A1W2PP55 124 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 AURKAO14965 403 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 OLFM2O95897 454 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 CHRNGP07510 517 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 ACRV1P26436 265 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 ZNF140P52738 457 aaPredicted RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 AP1S2P56377 157 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 FLOT2Q14254 428 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 PCLAFQ15004 111 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 CST6Q15828 149 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 FBXO43Q4G163 708 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 MDGA1Q8NFP4 955 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 GPR150Q8NGU9 434 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 C19orf60Q96EN9 201 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 MARK4Q96L34 752 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 TIMM22Q9Y584 194 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 TDRD15B5MCY1 1934 aaKnown RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 GON4LQ3T8J9 2241 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 MAN2B1O00754 1011 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 POP7O75817 140 aaKnown RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 PENKP01210 267 aaPredicted RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 FOSL2P15408 326 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 ALOX15P16050 662 aaPredicted RBP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 ILF3Q12906 894 aaKnown RBP eCLIP11.42□□□□□ -0.58
VPS4A-201ENST00000254950 GTF2H2Q13888 395 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 FBXW10Q5XX13 1052 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 GTF2H2CQ6P1K8 395 aa11.42□□□□□ -0.58
VPS4A-201ENST00000254950 LRRTM4Q86VH4 590 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms