RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PDLIM5Q96HC4 596 aaKnown RBP16.22■□□□□ 0.19
HOXD3-201ENST00000249440 CASD1Q96PB1 797 aa16.22■□□□□ 0.19
HOXD3-201ENST00000249440 CDK15Q96Q40 435 aa16.22■□□□□ 0.19
HOXD3-201ENST00000249440 SMPD3Q9NY59 655 aaPredicted RBP16.22■□□□□ 0.19
HOXD3-201ENST00000249440 CLOCKO15516 846 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 SEC24DO94855 1032 aaPredicted RBP16.21■□□□□ 0.19
HOXD3-201ENST00000249440 CDK4P11802 303 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 CORO1AP31146 461 aaKnown RBP16.21■□□□□ 0.19
HOXD3-201ENST00000249440 RNF219Q5W0B1 726 aaPredicted RBP16.21■□□□□ 0.19
HOXD3-201ENST00000249440 DHRSXQ8N5I4 330 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 OSCP1Q8WVF1 389 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 OVCA2Q8WZ82 227 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 EZH1Q92800 747 aaPredicted RBP16.21■□□□□ 0.19
HOXD3-201ENST00000249440 CEP295NLQ96MC4 621 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 PLEKHG4BQ96PX9 1271 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 TTPALQ9BTX7 342 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 BDH2Q9BUT1 245 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 CWH43Q9H720 699 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 PKP3Q9Y446 797 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 FADS3Q9Y5Q0 445 aa16.21■□□□□ 0.19
HOXD3-201ENST00000249440 ZNF840PA6NDX5 716 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 TRIM64A6NGJ6 449 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 NT5C1B-RDH14C9J2C7 533 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 KLKB1P03952 638 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 CAPN1P07384 714 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 RPL10P27635 214 aaKnown RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 SOX11P35716 441 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 RPS9P46781 194 aaKnown RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 SGSHP51688 502 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 CLCN7P51798 805 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 ARF5P84085 180 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 TRAF2Q12933 501 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 PCBP2Q15366 365 aaKnown RBP eCLIP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 ADGRF1Q5T601 910 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 LETMD1Q6P1Q0 360 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 SLC2A7Q6PXP3 512 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 IL27RAQ6UWB1 636 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 ABRAXAS1Q6UWZ7 409 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 TTC30BQ8N4P2 665 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 B4GALNT2Q8NHY0 566 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 MAGEE2Q8TD90 523 aaPredicted RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 BIRC7Q96CA5 298 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 RPL10LQ96L21 214 aaKnown RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 RPF2Q9H7B2 306 aaKnown RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 HEBP1Q9NRV9 189 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 HSFX1Q9UBD0 423 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 SRRDQ9UH36 339 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 MAGEL2Q9UJ55 1249 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 PHF24Q9UPV7 400 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 IFRD1O00458 451 aaPredicted RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 COCHO43405 550 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 STC2O76061 302 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 CAPGP40121 348 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 TUFMP49411 452 aaKnown RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 CACNG1Q06432 222 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 TWF1Q12792 350 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 ZBED5Q49AG3 693 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 HABP4Q5JVS0 413 aaKnown RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 GLYATQ6IB77 296 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 PATL1Q86TB9 770 aaKnown RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 ADAMTSL2Q86TH1 951 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 DNAJC5GQ8N7S2 189 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 FBXO22Q8NEZ5 403 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 ISG20Q96AZ6 181 aaKnown RBP16.2■□□□□ 0.18
HOXD3-201ENST00000249440 NSMCE2Q96MF7 247 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 SEPHS2Q99611 448 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 CFHR5Q9BXR6 569 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 P2RY12Q9H244 342 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 DHRS7Q9Y394 339 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 PCDHB1Q9Y5F3 818 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 SLC30A1Q9Y6M5 507 aa16.2■□□□□ 0.18
HOXD3-201ENST00000249440 IQCF5A8MTL0 148 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 ZNF701M0R085 212 aaPredicted RBP16.19■□□□□ 0.18
HOXD3-201ENST00000249440 ARNTLO00327 626 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 PRMT5O14744 637 aaPredicted RBP16.19■□□□□ 0.18
HOXD3-201ENST00000249440 HRH2P25021 359 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 GATMP50440 423 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 HPCAP84074 193 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 NCEH1Q6PIU2 408 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 PRSS55Q6UWB4 352 aaPredicted RBP16.19■□□□□ 0.18
HOXD3-201ENST00000249440 C16orf59Q7L2K0 433 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 SFRP1Q8N474 314 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 CHCHD4Q8N4Q1 142 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 CHID1Q9BWS9 393 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 PCDHB3Q9Y5E6 796 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 TSPAN3O60637 253 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 S100BP04271 92 aaPredicted RBP16.19■□□□□ 0.18
HOXD3-201ENST00000249440 CYBRD1Q53TN4 286 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 LINGO4Q6UY18 593 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 CERS6Q6ZMG9 384 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 TAS1R1Q7RTX1 841 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 LEMD2Q8NC56 503 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 GFM2Q969S9 779 aaKnown RBP16.19■□□□□ 0.18
HOXD3-201ENST00000249440 FBXL20Q96IG2 436 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 VPS50Q96JG6 964 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 RNF145Q96MT1 663 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 PIF1Q9H611 641 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 GKN1Q9NS71 199 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 IL17CQ9P0M4 197 aa16.19■□□□□ 0.18
HOXD3-201ENST00000249440 HCSTQ9UBK5 93 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms