RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 LGMNQ99538 433 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 BCL7BQ9BQE9 202 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 ZNF556Q9HAH1 456 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 SLC35C2Q9NQQ7 365 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 PRDM8Q9NQV8 689 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 SMYD2Q9NRG4 433 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 EMCNQ9ULC0 261 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 ST3GAL5Q9UNP4 418 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 RBP1P09455 135 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 PRKCHP24723 683 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 GTF2E2P29084 291 aaKnown RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 SLC12A2P55011 1212 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 ARPP19P56211 112 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 FPGSQ05932 587 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 MGAT3Q09327 533 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 SKIV2LQ15477 1246 aaKnown RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 N4BP2L1Q5TBK1 243 aaPredicted RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 GARNL3Q5VVW2 1013 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 MPP5Q8N3R9 675 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 CCNYL1Q8N7R7 359 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 VANGL1Q8TAA9 524 aaPredicted RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 FANK1Q8TC84 345 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 HTR3CQ8WXA8 447 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 LPPQ93052 612 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 GAD1Q99259 594 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 WACQ9BTA9 647 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 MED10Q9BTT4 135 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.48□□□□□ -0.253e-8■□□□□ 8.9
GABPB1-201ENST00000220429 UPF3AQ9H1J1 476 aaKnown RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 LRRC4Q9HBW1 653 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 MIOSQ9NXC5 875 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 RCOR3Q9P2K3 495 aaPredicted RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 HEATR9A2RTY3 570 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 MANSC4A6NHS7 340 aaPredicted RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 M0QYT0 321 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 AP3D1O14617 1153 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 AXIN1O15169 862 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 AKR1A1P14550 325 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 CTGFP29279 349 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 ALDH4A1P30038 563 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 NPY2RP49146 381 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 LSM3P62310 102 aaKnown RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 SEMA5AQ13591 1074 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 CBX2Q14781 532 aaPredicted RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 TMEM65Q6PI78 240 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 SLC22A15Q8IZD6 547 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 PCDH20Q8N6Y1 951 aaKnown RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 ZNF781Q8N8C0 355 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 RNF139Q8WU17 664 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 INTS12Q96CB8 462 aaKnown RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 LRRC39Q96DD0 335 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 SLC2A13Q96QE2 648 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 FBXL12Q9NXK8 326 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 OAZ3Q9UMX2 235 aa13.48□□□□□ -0.25
GABPB1-201ENST00000220429 TIMM13Q9Y5L4 95 aaPredicted RBP13.48□□□□□ -0.25
GABPB1-201ENST00000220429 EI24O14681 340 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 NCAM2O15394 837 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 ARHGEF9O43307 516 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 DNAJB5O75953 348 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 S100A6P06703 90 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 CTSHP09668 335 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 TKTL1P51854 596 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 DEFA1P59665 94 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 DEFA3P59666 94 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 COLEC12Q5KU26 742 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 SPRED1Q7Z699 444 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 PSTKQ8IV42 348 aaKnown RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 CNTD1Q8N815 330 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 C3orf58Q8NDZ4 430 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 SOCS4Q8WXH5 440 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 TESCQ96BS2 214 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 REXO4Q9GZR2 422 aaKnown RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 ING2Q9H160 280 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 WDR55Q9H6Y2 383 aaPredicted RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 PIGVQ9NUD9 493 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 TMEM30AQ9NV96 361 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 ENOPH1Q9UHY7 261 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 TRPV2Q9Y5S1 764 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 HTTP42858 3142 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 HMX2A2RU54 273 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 F5H423 210 aaPredicted RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 TRDMT1O14717 391 aaKnown RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 PLD2O14939 933 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 PLIN3O60664 434 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 DUSP11O75319 330 aaKnown RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 SLC4A1P02730 911 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 TP53P04637 393 aaPredicted RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 JUNP05412 331 aaKnown RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 DDCP20711 480 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 MAGEA11P43364 429 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 ADARB1P78563 741 aaKnown RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 S100A12P80511 92 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 BNC1Q01954 994 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 ZNF267Q14586 743 aaPredicted RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 GNASQ5JWF2 1037 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 TBCELQ5QJ74 424 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 GDF6Q6KF10 455 aaPredicted RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 TRMT10BQ6PF06 316 aaKnown RBP13.47□□□□□ -0.25
GABPB1-201ENST00000220429 CXCL17Q6UXB2 119 aa13.47□□□□□ -0.25
GABPB1-201ENST00000220429 ZNF704Q6ZNC4 412 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms