RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CDC20Q12834 499 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SNTA1Q13424 505 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SPCS2Q15005 226 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GOLGA7BQ2TAP0 167 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MPZL3Q6UWV2 235 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 AHSA2Q719I0 299 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 BEST4Q8NFU0 473 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SLC35B2Q8TB61 432 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SLC41A3Q96GZ6 507 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PPP1R16AQ96I34 528 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 OAZ3Q9UMX2 235 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MGAT4BQ9UQ53 548 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 EXOSC1Q9Y3B2 195 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PCDHGB2Q9Y5G2 931 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CEPT1Q9Y6K0 416 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SHPRHQ149N8 1683 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 OR2AT4A6NND4 320 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ENTPD3O75355 529 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 LYPLA1O75608 230 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 OAZ2O95190 189 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CDKN2BP42772 138 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SLC13A2Q13183 592 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PLD1Q13393 1074 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GALEQ14376 348 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SSX2Q16385 188 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 KCNT2Q6UVM3 1135 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 HSDL2Q6YN16 418 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MACC1Q6ZN28 852 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 NPLOC4Q8TAT6 608 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF512Q96ME7 567 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MCCC1Q96RQ3 725 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 FUNDC2Q9BWH2 189 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 APOL5Q9BWW9 433 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TP63Q9H3D4 680 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CISHQ9NSE2 258 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 A0A1W2PPM1 405 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 EIF1AYO14602 144 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MITFO75030 526 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 EIF2S3P41091 472 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 EIF1AXP47813 144 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DNAJB13P59910 316 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CYCSP99999 105 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GALNT1Q10472 559 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ATP13A4Q4VNC1 1196 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZDHHC20Q5W0Z9 365 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MSANTD1Q6ZTZ1 278 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MON1BQ7L1V2 547 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 COMMD7Q86VX2 200 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MAELQ96JY0 434 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZCCHC2Q9C0B9 1178 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SARS2Q9NP81 518 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM184CQ9NVA4 438 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TAS2R8Q9NYW2 309 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CALML5Q9NZT1 146 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 RAD17O75943 681 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PAHP00439 452 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FGF1P05230 155 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CSH1P0DML2 217 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CSH2P0DML3 217 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ALDH4A1P30038 563 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 UQCRC1P31930 480 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 KIR3DL1P43629 444 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 OMPP47874 163 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SKP1P63208 163 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SEMA5AQ13591 1074 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FGD3Q5JSP0 725 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 C1QTNF12Q5T7M4 302 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 LCN8Q6JVE9 175 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SYT12Q8IV01 421 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 BRSK2Q8IWQ3 736 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SCUBE3Q8IX30 993 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 OR8J3Q8NGG0 315 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 GANCQ8TET4 914 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FKBP10Q96AY3 582 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CHFRQ96EP1 664 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MFSD14AQ96MC6 490 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TRNT1Q96Q11 434 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ADAM33Q9BZ11 813 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TRIM2Q9C040 744 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PDP1Q9P0J1 537 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SPASTQ9UBP0 616 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ERCC6L2Q5T890 1561 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 LOC100130705A0A1B0GUX0 176 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ATP6V1G2-DDX39BF2Z307 99 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 INPPL1O15357 1258 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC37A4O43826 429 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CCNYL3P0C7X3 344 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 EPB42P16452 691 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MIPP30301 263 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PWP1Q13610 501 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TSTA3Q13630 321 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF234Q14588 700 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 OR2T5Q6IEZ7 315 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 OAFQ86UD1 273 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC34A3Q8N130 599 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 OR2T29Q8NH02 315 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF578Q96N58 590 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF641Q96N77 438 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TTLL2Q9BWV7 592 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZFP57Q9NU63 452 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms