RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ACAD10Q6JQN1 1059 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 RGMBQ6NW40 437 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CDC73Q6P1J9 531 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PAPD4Q6PIY7 484 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 PAQR6Q6TCH4 344 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CYP20A1Q6UW02 462 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PLXDC2Q6UX71 529 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 RBMS3Q6XE24 437 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 SLC36A4Q6YBV0 504 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CFAP77Q6ZQR2 320 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CLEC17AQ6ZS10 378 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SEPT14Q6ZU15 432 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SLC46A3Q7Z3Q1 461 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ZSCAN2Q7Z7L9 614 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 HEATR4Q86WZ0 1026 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 HPS6Q86YV9 775 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ANKRD18AQ8IVF6 992 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 RNF113BQ8IZP6 322 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 ANKRD42Q8N9B4 389 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SLC38A9Q8NBW4 561 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 HJURPQ8NCD3 748 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 CSNK2A3Q8NEV1 391 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 IL17REQ8NFR9 667 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 OR52I2Q8NH67 350 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 NFKBIDQ8NI38 313 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 THAP6Q8TBB0 222 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ZCCHC10Q8TBK6 192 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MRGPRDQ8TDS7 321 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 TRPC4APQ8TEL6 797 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SLC38A5Q8WUX1 472 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PSPC1Q8WXF1 523 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 ST8SIA4Q92187 359 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CCT6BQ92526 530 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PIGTQ969N2 578 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ZUFSPQ96AP4 578 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ORAI1Q96D31 301 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 RNF125Q96EQ8 232 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MMABQ96EY8 250 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 RRNAD1Q96FB5 475 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 APOPT1Q96IL0 206 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ZNF570Q96NI8 536 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SLC22A12Q96S37 553 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MTERF1Q99551 399 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 PIP5K1AQ99755 562 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CMKLR1Q99788 373 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SH3GL2Q99962 352 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SLX1AQ9BQ83 275 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 TMEM47Q9BQJ4 181 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 GPATCH1Q9BRR8 931 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 SYT17Q9BSW7 474 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PAGR1Q9BTK6 254 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 POLR3CQ9BUI4 534 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 RAB11FIP5Q9BXF6 653 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 IFIH1Q9BYX4 1025 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 TFB2MQ9H5Q4 396 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 MAGIXQ9H6Y5 334 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 POLR1BQ9H9Y6 1135 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PPCSQ9HAB8 311 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 UPF2Q9HAU5 1272 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 UBN1Q9NPG3 1134 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MBNL1Q9NR56 388 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 ASAH2Q9NR71 780 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ACSS1Q9NUB1 689 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 BABAM1Q9NWV8 329 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ADPRHL2Q9NX46 363 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MTMR10Q9NXD2 777 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 IL1RAPL1Q9NZN1 696 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 KLHL8Q9P2G9 620 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 EPHA6Q9UF33 1036 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CNOT7Q9UIV1 285 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 ACAD8Q9UKU7 415 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PADI1Q9ULC6 663 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SUFUQ9UMX1 484 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MOB4Q9Y3A3 225 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 FAM96BQ9Y3D0 163 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CEPT1Q9Y6K0 416 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ARHGEF40Q8TER5 1519 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 UTYO14607 1347 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 IGKV6-21A0A0C4DH24 114 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 A0A0G2JNG1 304 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 FAM237AA0A1B0GTK4 181 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CCDC196A0A1B0GTZ2 297 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 KANSL1LA0AUZ9 987 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 OR2M5A3KFT3 312 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 OR5K3A6NET4 321 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 A6NLC8 198 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 B4E171 279 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 M0QZ24 198 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PHOX2AO14813 284 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ATP2A1O14983 1001 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ANKRD28O15084 1053 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 KCNN4O15554 427 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PAPSS1O43252 624 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 ZNHIT1O43257 154 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SPINT2O43291 252 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 HCRTR2O43614 444 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SYNGR3O43761 229 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 OR10H2O60403 315 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CIDEAO60543 219 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GUCY1B2O75343 617 aa0.41□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms