RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PDXKO00764 312 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ZBTB14O43829 449 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TLL1O43897 1013 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 BANF1O75531 89 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 KLHL18O94889 574 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 GABARAPO95166 117 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ZBTB7AO95365 584 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 LTA4HP09960 611 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ZSCAN5DPP0CG00 497 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 IL7RP16871 459 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ATP6V1B2P21281 511 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CASP2P42575 452 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CPT1AP50416 773 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 RPP30P78346 268 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 HTRA4P83105 476 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CTBSQ01459 385 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ACY1Q03154 408 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 NFX1Q12986 1120 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 PRKAA1Q13131 559 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 FASTKQ14296 549 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 RFTN1Q14699 578 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TUSC1Q2TAM9 212 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CYP27C1Q4G0S4 372 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF57Q68EA5 555 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 RFX6Q8HWS3 928 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ZBTB38Q8NAP3 1195 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 C11orf65Q8NCR3 313 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 RAET1EQ8TD07 263 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 HDAC10Q969S8 669 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CCDC126Q96EE4 140 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 C11orf24Q96F05 449 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 GAS2L1Q99501 681 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 MED18Q9BUE0 208 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 BCL2L14Q9BZR8 327 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 RC3H2Q9HBD1 1191 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ZFP14Q9HCL3 533 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ASNSD1Q9NWL6 643 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 COG5Q9UP83 839 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ZFR2Q9UPR6 939 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ANKRD6Q9Y2G4 727 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 DLGAP4Q9Y2H0 992 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHGB1Q9Y5G3 927 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 POLRMTO00411 1230 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 AKR7A2O43488 359 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 IPO13O94829 963 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 RPLP0P05388 317 aaKnown RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 KCNC1P48547 511 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 FMO5P49326 533 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 VEGFCP49767 419 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ATP12AP54707 1039 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 CDH13P55290 713 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 INCA1Q0VD86 236 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ALCAMQ13740 583 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 PON3Q15166 354 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SUPT20HL1Q3ZLR7 823 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SCYL2Q6P3W7 929 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 LIPIQ6XZB0 460 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 ANKS3Q6ZW76 656 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TCTE3Q8IZS6 198 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 RDH13Q8NBN7 331 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 GLIS3Q8NEA6 775 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 OR5J2Q8NH18 312 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SLC22A17Q8WUG5 538 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 C19orf60Q96EN9 201 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SPRTNQ9H040 489 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 BTBD1Q9H0C5 482 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 PDGFCQ9NRA1 345 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TOPORSQ9NS56 1045 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SPATA6Q9NWH7 488 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-216ENST00000637968 TAS2R14Q9NYV8 317 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 MGAT4AQ9UM21 535 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 NAALAD2Q9Y3Q0 740 aa5.69□□□□□ -1.5
SCN1A-216ENST00000637968 SPHKAPQ2M3C7 1700 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PRAMEF33A0A0G2JMD5 474 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 A0A0X1KG70 313 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PER2O15055 1255 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 HS6ST1O60243 411 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 PRAMEF10O60809 474 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CSF2P04141 144 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 DARSP14868 501 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ETV4P43268 484 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 MAP2K6P52564 334 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 SLC7A2P52569 658 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 POU4F1Q01851 419 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RPL6Q02878 288 aaKnown RBP5.68□□□□□ -1.5
SCN1A-216ENST00000637968 LRRC26Q2I0M4 334 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 RFX4Q33E94 735 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 MAJINQ3KP22 176 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 C6orf141Q5SZD1 244 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 GLYATQ6IB77 296 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 C17orf107Q6ZR85 190 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 TEX19Q8NA77 164 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 POF1BQ8WVV4 589 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 MUL1Q969V5 352 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 MASTLQ96GX5 879 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 MMP28Q9H239 520 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 CRYL1Q9Y2S2 319 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF804BA4D1E1 1349 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 A0A0G2JMP0 313 aa5.68□□□□□ -1.5
SCN1A-216ENST00000637968 TCRBV9S1A1TA0A576 114 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms