RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TMEM168Q9H0V1 697 aa17.59■□□□□ 0.41
CLN3-247ENST00000636351 OR2AG1Q9H205 316 aa17.59■□□□□ 0.41
CLN3-247ENST00000636351 ASB8Q9H765 288 aa17.59■□□□□ 0.41
CLN3-247ENST00000636351 SYBUQ9NX95 663 aa17.59■□□□□ 0.41
CLN3-247ENST00000636351 LRP4O75096 1905 aa17.59■□□□□ 0.41
CLN3-247ENST00000636351 COL27A1Q8IZC6 1860 aaPredicted RBP17.58■□□□□ 0.41
CLN3-247ENST00000636351 MROH6A6NGR9 719 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 GAPDHSO14556 408 aaPredicted RBP17.58■□□□□ 0.4
CLN3-247ENST00000636351 NPY2RP49146 381 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 MRPS25P82663 173 aaKnown RBP17.58■□□□□ 0.4
CLN3-247ENST00000636351 ILF3Q12906 894 aaKnown RBP eCLIP17.58■□□□□ 0.4
CLN3-247ENST00000636351 NFATC2Q13469 925 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 PCID2Q5JVF3 399 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 LDLRAP1Q5SW96 308 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 C6orf132Q5T0Z8 1188 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 RNASEH2BQ5TBB1 312 aaKnown RBP17.58■□□□□ 0.4
CLN3-247ENST00000636351 NLRP9Q7RTR0 991 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 TAF8Q7Z7C8 310 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 GKN2Q86XP6 184 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 NAT8LQ8N9F0 302 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 MCUQ8NE86 351 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 ULK4Q96C45 1275 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 GRAMD1AQ96CP6 724 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 PRR11Q96HE9 360 aaPredicted RBP17.58■□□□□ 0.4
CLN3-247ENST00000636351 TTC25Q96NG3 672 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 SLC46A1Q96NT5 459 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 C19orf43Q9BQ61 176 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 CLPBQ9H078 707 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 XAB2Q9HCS7 855 aaKnown RBP17.58■□□□□ 0.4
CLN3-247ENST00000636351 ASH1LQ9NR48 2969 aaKnown RBP17.58■□□□□ 0.4
CLN3-247ENST00000636351 SAMD15Q9P1V8 674 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 ATXN10Q9UBB4 475 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 ZNHIT2Q9UHR6 403 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 PRKAB1Q9Y478 270 aa17.58■□□□□ 0.4
CLN3-247ENST00000636351 ZNF106Q9H2Y7 1883 aaKnown RBP17.57■□□□□ 0.4
CLN3-247ENST00000636351 EFCAB8A8MWE9 144 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 LMO7DNF2Z398 122 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 AVILO75366 819 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 TCEA3O75764 348 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 RPIAP49247 311 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 PRAMEP78395 509 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 XIAPP98170 497 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 VAC14Q08AM6 782 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 PEX6Q13608 980 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 GPRC6AQ5T6X5 926 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 CRTC3Q6UUV7 619 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 TAS2R42Q7RTR8 314 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 MAATS1Q7Z4T9 603 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 SNX20Q7Z614 316 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 ADGRG6Q86SQ4 1221 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 TRAPPC5Q8IUR0 188 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 DDHD1Q8NEL9 900 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 DTX3LQ8TDB6 740 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 SCG3Q8WXD2 468 aaKnown RBP17.57■□□□□ 0.4
CLN3-247ENST00000636351 GLMNQ92990 594 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 NAT6Q93015 286 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.57■□□□□ 0.4
CLN3-247ENST00000636351 WBP1Q96G27 269 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 SERPINB12Q96P63 405 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 CCDC3Q9BQI4 270 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 GSDMCQ9BYG8 508 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 SEMA4CQ9C0C4 833 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 FAM96AQ9H5X1 160 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 SYNDIG1Q9H7V2 258 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 RMI1Q9H9A7 625 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 TRIM39Q9HCM9 518 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 SMOXQ9NWM0 555 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 SLC2A6Q9UGQ3 507 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 TMPRSS11EQ9UL52 423 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 PCDHGA8Q9Y5G5 932 aa17.57■□□□□ 0.4
CLN3-247ENST00000636351 FAM187AA6NFU0 413 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 YY2O15391 372 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 RAD51CO43502 376 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 VEGFDO43915 354 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 CDK14O94921 469 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 MLNP12872 115 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 ZNF8P17098 575 aaPredicted RBP17.56■□□□□ 0.4
CLN3-247ENST00000636351 MSH3P20585 1137 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 ARSDP51689 593 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 PDX1P52945 283 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 TUBB2AQ13885 445 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 LY6DQ14210 128 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 PLA2G4EQ3MJ16 856 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 KHDC1Q4VXA5 237 aaKnown RBP17.56■□□□□ 0.4
CLN3-247ENST00000636351 PYCR3Q53H96 274 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 AFTPHQ6ULP2 937 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 MICALCLQ6ZW33 695 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 ZNF572Q7Z3I7 529 aaPredicted RBP17.56■□□□□ 0.4
CLN3-247ENST00000636351 HOOK3Q86VS8 718 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 OR13J1Q8NGT2 312 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 OR6P1Q8NGX9 317 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 HDAC10Q969S8 669 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 DCUN1D1Q96GG9 259 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 SNF8Q96H20 258 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 CDKN2AIPNLQ96HQ2 116 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 TUBB2BQ9BVA1 445 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 CHRAC1Q9NRG0 131 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 SIRPGQ9P1W8 387 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 SSUH2Q9Y2M2 353 aa17.56■□□□□ 0.4
CLN3-247ENST00000636351 MRFAP1Q9Y605 127 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms