RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CDC16Q13042 620 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 RAPSNQ13702 412 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 CAMK1Q14012 370 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 HNRNPDQ14103 355 aaKnown RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 MORC3Q14149 939 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 GSTA3Q16772 222 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 FASTKD5Q7L8L6 764 aaKnown RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 ATG9AQ7Z3C6 839 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 LRRTM1Q86UE6 522 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 C11orf53Q8IXP5 236 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 CCDC146Q8IYE0 955 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 PM20D2Q8IYS1 436 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 SLC5A8Q8N695 610 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 ENAHQ8N8S7 591 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 TMEM178AQ8NBL3 297 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 OR2T12Q8NG77 320 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 OMA1Q96E52 524 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 LAT2Q9GZY6 243 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 ASAH2Q9NR71 780 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 PPP1R14DQ9NXH3 145 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 COQ3Q9NZJ6 369 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 DLGAP2Q9P1A6 1054 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 KLF2Q9Y5W3 355 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 FAM237AA0A1B0GTK4 181 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 PLK4O00444 970 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 TSPAN4O14817 238 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 GPR137BO60478 399 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 KCNK5O95279 499 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 CDC25CP30307 473 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 FASTKD1Q53R41 847 aaKnown RBP2.5□□□□□ -2.01
SCN1A-208ENST00000625916 ZNF343Q6P1L6 599 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 PTOV1Q86YD1 416 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 PLD3Q8IV08 490 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 NGEFQ8N5V2 710 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 EMC1Q8N766 993 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 OR1J2Q8NGS2 313 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 GPATCH1Q9BRR8 931 aaKnown RBP2.5□□□□□ -2.01
SCN1A-208ENST00000625916 P2RY12Q9H244 342 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 RIC8AQ9NPQ8 531 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 LRWD1Q9UFC0 647 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 LIMA1Q9UHB6 759 aaKnown RBP2.5□□□□□ -2.01
SCN1A-208ENST00000625916 HAO1Q9UJM8 370 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 YIPF1Q9Y548 306 aa2.5□□□□□ -2.01
SCN1A-208ENST00000625916 PRRC2AP48634 2157 aaKnown RBP2.49□□□□□ -2.01
SCN1A-208ENST00000625916 IGLV3-10A0A075B6K4 115 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 C1orf226A1L170 272 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 ZNF197O14709 1029 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 RTL8CO15255 209 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 CAPN2P17655 700 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 PTGER3P43115 390 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 MMP15P51511 669 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 CCR5P51681 352 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 CTSCP53634 463 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 CD81P60033 236 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 NEXNQ0ZGT2 675 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 SGSM1Q2NKQ1 1148 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 CTU2Q2VPK5 515 aaKnown RBP2.49□□□□□ -2.01
SCN1A-208ENST00000625916 GLIPR1L2Q4G1C9 344 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 C2CD6Q53TS8 623 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 NAA35Q5VZE5 725 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 ZDHHC20Q5W0Z9 365 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 LCN10Q6JVE6 187 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 KRTAP5-5Q701N2 237 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-208ENST00000625916 GSTA5Q7RTV2 222 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 SLC16A9Q7RTY1 509 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 ADIPOR2Q86V24 386 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 ZNF843Q8N446 348 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 C1orf52Q8N6N3 182 aaKnown RBP2.49□□□□□ -2.01
SCN1A-208ENST00000625916 SEMA4DQ92854 862 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 GTF3C6Q969F1 213 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 SLC47A1Q96FL8 570 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 TMEM68Q96MH6 324 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 MPHOSPH6Q99547 160 aaKnown RBP2.49□□□□□ -2.01
SCN1A-208ENST00000625916 FUZQ9BT04 418 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 PRKRIP1Q9H875 184 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-208ENST00000625916 KCND2Q9NZV8 630 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 COPG2Q9UBF2 871 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 MAN1B1Q9UKM7 699 aa2.49□□□□□ -2.01
SCN1A-208ENST00000625916 IGHV4-61A0A0C4DH41 118 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 OR6C76A6NM76 312 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 CDC123O75794 336 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-208ENST00000625916 NKX2-2O95096 273 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 IGHV4-59P01825 116 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 FRMD6-AS1P0C7T7 363 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 CPOXP36551 454 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 PIP4K2AP48426 406 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-208ENST00000625916 CTCFP49711 727 aaPredicted RBP2.48□□□□□ -2.01
SCN1A-208ENST00000625916 CDH11P55287 796 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 MFAP5Q13361 173 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 TEAD2Q15562 447 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 PNLIPRP3Q17RR3 467 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 SLC25A30Q5SVS4 291 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 NSUN5P2Q63ZY6 315 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 ZNF584Q8IVC4 421 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 HM13Q8TCT9 377 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 TRIM63Q969Q1 353 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 ZBTB10Q96DT7 871 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 LRRC61Q9BV99 259 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 RAB11FIP5Q9BXF6 653 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 GPR63Q9BZJ6 419 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms