RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RSAD2Q8WXG1 361 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 FAM167AQ96KS9 214 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 MMP27Q9H306 513 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 EVA1BQ9NVM1 165 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 CYTH4Q9UIA0 394 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 GMPPBQ9Y5P6 360 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SNX5Q9Y5X3 404 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 H0YAE9 185 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 EI24O14681 340 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 OR2B3O76000 313 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 STAU1O95793 577 aaKnown RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 CHRNA1P02708 482 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 RPS17P08708 135 aaKnown RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 SLC2A3P11169 496 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 TNNI3P19429 210 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 MBTD1Q05BQ5 628 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 ZNF252P-AS1Q0IIN9 211 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 PSMD5Q16401 504 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 TBCELQ5QJ74 424 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 ALKBH2Q6NS38 261 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 DNAJC24Q6P3W2 148 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 USP50Q70EL3 339 aaPredicted RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 RASGRP3Q8IV61 690 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 CNTD1Q8N815 330 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 OR8K5Q8NH50 307 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 UBA3Q8TBC4 463 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 FEZF2Q8TBJ5 459 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 SPATA18Q8TC71 538 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 UFD1Q92890 307 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 MAGEB10Q96LZ2 347 aaPredicted RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 NPAS2Q99743 824 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 KATNAL1Q9BW62 490 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 NIF3L1Q9GZT8 377 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 SDCBP2Q9H190 292 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 SOX17Q9H6I2 414 aaPredicted RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 RPF1Q9H9Y2 349 aaKnown RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 TINAGQ9UJW2 476 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 OAZ3Q9UMX2 235 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 MAGED2Q9UNF1 606 aaPredicted RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 HES2Q9Y543 173 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 HRH3Q9Y5N1 445 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 COPG1Q9Y678 874 aaKnown RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 HSPE1-MOB4S4R3N1 261 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 ZNF99A8MXY4 864 aaPredicted RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 ACKR2O00590 384 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 GMDSO60547 372 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 GRAP2O75791 330 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 INMTO95050 263 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 TNNC2P02585 160 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 KRT1P04264 644 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 ITGAVP06756 1048 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 STAG3L1P0CL83 205 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 RAB3AP20336 220 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 MSH3P20585 1137 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 FASP25445 335 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 ASPAP45381 313 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 RPS9P46781 194 aaKnown RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 ARHGAP1Q07960 439 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 SEMA3BQ13214 749 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 BTN1A1Q13410 526 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 GRM7Q14831 915 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 MFSD7Q6UXD7 560 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 STRADAQ7RTN6 431 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 OR10T2Q8NGX3 314 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 JOSD2Q8TAC2 188 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 MCOLN3Q8TDD5 553 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 ST8SIA4Q92187 359 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 PTP4A1Q93096 173 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 PHF21AQ96BD5 680 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 CENPNQ96H22 339 aaPredicted RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 MUS81Q96NY9 551 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 SAV1Q9H4B6 383 aaPredicted RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 MRM3Q9HC36 420 aaKnown RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 AGPAT4Q9NRZ5 378 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 CCM2LQ9NUG4 571 aaPredicted RBP10.13□□□□□ -0.79
VPS39-214ENST00000614932 TLK1Q9UKI8 766 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 COPS3Q9UNS2 423 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 KCNH4Q9UQ05 1017 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 ACTL7AQ9Y615 435 aa10.13□□□□□ -0.79
VPS39-214ENST00000614932 MEIOCA2RUB1 952 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 FAM149AA5PLN7 773 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 C22orf31O95567 290 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 APOC1P02654 83 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 POU2F1P14859 743 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 ARRB2P32121 409 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 GGT5P36269 586 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 LTB4RQ15722 352 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 CA9Q16790 459 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 DPY19L1Q2PZI1 675 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 BTBD16Q32M84 506 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 RAB6CQ53S08 254 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 GLRA4Q5JXX5 417 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 EFL1Q7Z2Z2 1120 aaKnown RBP10.12□□□□□ -0.79
VPS39-214ENST00000614932 C16orf62Q7Z3J2 963 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 LIMS2Q7Z4I7 341 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 DPP9Q86TI2 863 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 DHFR2Q86XF0 187 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 PLD3Q8IV08 490 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 DDIASQ8IXT1 998 aa10.12□□□□□ -0.79
VPS39-214ENST00000614932 KIAA0319LQ8IZA0 1049 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms