RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ABCD2Q9UBJ2 740 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 A0A087X1B8 175 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ZNF197O14709 1029 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 GNRH1P01148 92 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CHRNA1P02708 482 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MAGEA3P43357 314 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 GRIA4P48058 902 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 NPY2RP49146 381 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 INTS6LQ5JSJ4 861 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 LIPMQ5VYY2 423 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TFAP2CQ92754 450 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 KCTD7Q96MP8 289 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RIT2Q99578 217 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DBNDD1Q9H9R9 158 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CCDC167Q9P0B6 97 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TBC1D30Q9Y2I9 924 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DHRS7Q9Y394 339 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 PIGRP01833 764 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 HAAOP46952 286 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 VARS2Q5ST30 1063 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CADM3Q8N126 398 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ZFAND1Q8TCF1 268 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RBM14Q96PK6 669 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 GPR63Q9BZJ6 419 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 FAM49AQ9H0Q0 323 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SNTG1Q9NSN8 517 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 VPS28Q9UK41 221 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ARGFXA6NJG6 315 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 AZGP1P25311 298 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 HOXA10P31260 410 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MLLT3P42568 568 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RHDQ02161 417 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ATP6AP1Q15904 470 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 PAN3Q58A45 887 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SYVN1Q86TM6 617 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ZNF280BQ86YH2 543 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DENND1AQ8TEH3 1009 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RADILQ96JH8 1075 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CNTNAP3BQ96NU0 1288 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 APBA2Q99767 749 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 VSX1Q9NZR4 365 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 HCN2Q9UL51 889 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 FKBP7Q9Y680 259 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 KIAA0355O15063 1070 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SLC22A3O75751 556 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DDCP20711 480 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 FSCN1Q16658 493 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CYP1B1Q16678 543 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SPANXN3Q5MJ09 141 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RC3H1Q5TC82 1133 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 KHDRBS2Q5VWX1 349 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 DHRS4L2Q6PKH6 230 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SLC38A4Q969I6 547 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TAAR8Q969N4 342 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 C18orf25Q96B23 403 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ITPAQ9BY32 194 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SMCO4Q9NRQ5 59 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TRHDEQ9UKU6 1024 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 PCDHB8Q9UN66 801 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ST3GAL5Q9UNP4 418 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TCRBV9S1A1TA0A576 114 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ALDH1A1P00352 501 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ERCC2P18074 760 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 HSD17B2P37059 387 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 NDST1P52848 882 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 PRKCDQ05655 676 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 FBXO31Q5XUX0 539 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SPOCD1Q6ZMY3 1216 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ZBTB8OSQ8IWT0 167 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ZNF614Q8N883 585 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CHURC1Q8WUH1 139 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CELF1Q92879 486 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RASSF1Q9NS23 344 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 PRKAG2Q9UGJ0 569 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ADGRE2Q9UHX3 823 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MGAT4AQ9UM21 535 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 NUP188Q5SRE5 1749 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CASKO14936 926 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 HCN1O60741 890 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MAFO75444 373 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 JRKO75564 520 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 IPO13O94829 963 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CST1P01037 141 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MMP12P39900 470 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 MCAMP43121 646 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 AFF1P51825 1210 aaKnown RBP4.91□□□□□ -1.62
VPS13D-213ENST00000613099 RTL10Q7L3V2 364 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CPT1BQ92523 772 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 LRFN5Q96NI6 719 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 COG5Q9UP83 839 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 NINQ8N4C6 2090 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 TUBAL3A6NHL2 446 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SUPT7LO94864 414 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 HTR3BO95264 441 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 HMBSP08397 361 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 SSTR1P30872 391 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 ASMTP46597 345 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 FXR2P51116 673 aaKnown RBP eCLIP4.91□□□□□ -1.627e-7■■■■□ 21.2
VPS13D-213ENST00000613099 ARHGDIBP52566 201 aa4.91□□□□□ -1.62
VPS13D-213ENST00000613099 CCNIQ14094 377 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms