RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 P3H4Q92791 437 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 RTP4Q96DX8 246 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 ZPBPQ9BS86 351 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 TIMM29Q9BSF4 260 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 OSBPL8Q9BZF1 889 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 UCK1Q9HA47 277 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 FAM153AQ9UHL3 310 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 PILRAQ9UKJ1 303 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 SPO11Q9Y5K1 396 aa18.45■□□□□ 0.54
PNKP-213ENST00000599543 MN1Q10571 1320 aaPredicted RBP18.45■□□□□ 0.54
PNKP-213ENST00000599543 AURKAO14965 403 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 CDK14O94921 469 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 XRCC1P18887 633 aaPredicted RBP18.44■□□□□ 0.54
PNKP-213ENST00000599543 NFKB1P19838 968 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 HMGCLP35914 325 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 GTF2H3Q13889 308 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 CCDC181Q5TID7 509 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 ZC3H18Q86VM9 953 aaKnown RBP18.44■□□□□ 0.54
PNKP-213ENST00000599543 NLGN4XQ8N0W4 816 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 UBL4BQ8N7F7 174 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 NLGN4YQ8NFZ3 816 aaPredicted RBP18.44■□□□□ 0.54
PNKP-213ENST00000599543 GDAP1Q8TB36 358 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 KIAA1143Q96AT1 154 aaPredicted RBP18.44■□□□□ 0.54
PNKP-213ENST00000599543 HES6Q96HZ4 224 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 VPS35Q96QK1 796 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 SLC12A9Q9BXP2 914 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 BPIFA1Q9NP55 256 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 FBXO8Q9NRD0 319 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 SCHIP1Q9P0W5 487 aaPredicted RBP18.44■□□□□ 0.54
PNKP-213ENST00000599543 KLHL8Q9P2G9 620 aaPredicted RBP18.44■□□□□ 0.54
PNKP-213ENST00000599543 SLC23A2Q9UGH3 650 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 PYCARDQ9ULZ3 195 aa18.44■□□□□ 0.54
PNKP-213ENST00000599543 TCRBV7S2A1N4TA0A589 114 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 UBXN7O94888 489 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 ANKRD34CP0C6C1 535 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 VCLP18206 1134 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 CD68P34810 354 aaPredicted RBP18.43■□□□□ 0.54
PNKP-213ENST00000599543 WNT3AP56704 352 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 WASHC5Q12768 1159 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 PPP2R5EQ16537 467 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 ATP13A5Q4VNC0 1218 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 TMEM26Q6ZUK4 368 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 BBS12Q6ZW61 710 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 TRAPPC5Q8IUR0 188 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 REXO1L1PQ8IX06 675 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 TTC25Q96NG3 672 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 TRABDQ9H4I3 376 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 GPN2Q9H9Y4 310 aaPredicted RBP18.43■□□□□ 0.54
PNKP-213ENST00000599543 STARD5Q9NSY2 213 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 POT1Q9NUX5 634 aa18.43■□□□□ 0.54
PNKP-213ENST00000599543 USP27XA6NNY8 438 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 ZNF891A8MT65 544 aaPredicted RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 MIF4GDA9UHW6 222 aaKnown RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 F5H423 210 aaPredicted RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 POLR1CO15160 346 aaPredicted RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 CAPN5O15484 640 aaPredicted RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 TYRP1P17643 537 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 AMD1P17707 334 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 IDSP22304 550 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 RPL10P27635 214 aaKnown RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 MAP4P27816 1152 aaKnown RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 GFERP55789 205 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 NOMO1Q15155 1222 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 KHDC1Q4VXA5 237 aaKnown RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 SIRPB2Q5JXA9 342 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 ZDHHC20Q5W0Z9 365 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 BORAQ6PGQ7 559 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 KDELC1Q6UW63 502 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 ZNF662Q6ZS27 426 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 ZNF547Q8IVP9 402 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 VAT1Q99536 393 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 ZCCHC2Q9C0B9 1178 aaKnown RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 APMAPQ9HDC9 416 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 HACD3Q9P035 362 aa18.42■□□□□ 0.54
PNKP-213ENST00000599543 ZNF624Q9P2J8 865 aaPredicted RBP18.42■□□□□ 0.54
PNKP-213ENST00000599543 LOC285095A0A1B0GVY8 99 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 PYCARD-AS1I3L0S3 204 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 PPFIA2O75334 1257 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 STK17BO94768 372 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 EPOP01588 193 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 C9P02748 559 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 SPAM1P38567 509 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 SLC19A1P41440 591 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 DRG2P55039 364 aaKnown RBP18.41■□□□□ 0.54
PNKP-213ENST00000599543 COPS2P61201 443 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 OTUD4Q01804 1114 aaKnown RBP18.41■□□□□ 0.54
PNKP-213ENST00000599543 TMEM115Q12893 351 aaPredicted RBP18.41■□□□□ 0.54
PNKP-213ENST00000599543 CLCA4Q14CN2 919 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 MEI1Q5TIA1 1274 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 PID1Q7Z2X4 250 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 GLT6D1Q7Z4J2 308 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 SLC25A41Q8N5S1 370 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 IPMKQ8NFU5 416 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 BRSK1Q8TDC3 778 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 BLOC1S5Q8TDH9 187 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 CXorf40BQ96DE9 158 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 C9orf72Q96LT7 481 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 TGM7Q96PF1 710 aa18.41■□□□□ 0.54
PNKP-213ENST00000599543 QKIQ96PU8 341 aaKnown RBP eCLIP18.41■□□□□ 0.54
PNKP-213ENST00000599543 ALS2CR12Q96Q35 445 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms