RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 TDP1Q9NUW8 608 aa19.46■□□□□ 0.71
CLIP3-206ENST00000593074 ADA2Q9NZK5 511 aa19.46■□□□□ 0.71
CLIP3-206ENST00000593074 ASB1Q9Y576 335 aa19.46■□□□□ 0.71
CLIP3-206ENST00000593074 GLYATL1P3A0A0U1RQE8 302 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 SMNDC1O75940 238 aaKnown RBP eCLIP19.45■□□□□ 0.7
CLIP3-206ENST00000593074 HLA-FP30511 346 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 MSX2P35548 267 aaPredicted RBP19.45■□□□□ 0.7
CLIP3-206ENST00000593074 CTSOP43234 321 aaPredicted RBP19.45■□□□□ 0.7
CLIP3-206ENST00000593074 MRPL19P49406 292 aaKnown RBP19.45■□□□□ 0.7
CLIP3-206ENST00000593074 STK19P49842 368 aaPredicted RBP19.45■□□□□ 0.7
CLIP3-206ENST00000593074 SNRPD1P62314 119 aaKnown RBP19.45■□□□□ 0.7
CLIP3-206ENST00000593074 MRPS22P82650 360 aaKnown RBP19.45■□□□□ 0.7
CLIP3-206ENST00000593074 GSTA3Q16772 222 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 LPCAT4Q643R3 524 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 TMEM25Q86YD3 366 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 ECHDC3Q96DC8 303 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 RPL10LQ96L21 214 aaKnown RBP19.45■□□□□ 0.7
CLIP3-206ENST00000593074 KLHL4Q9C0H6 718 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 LINC01553A4QN01 128 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 PEX1O43933 1283 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 HGFP14210 728 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 IDO1P14902 403 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 SPAM1P38567 509 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 ECT2LQ008S8 904 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 RBBP7Q16576 425 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 FUT11Q495W5 492 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 GPR33Q49SQ1 333 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 GRAMD4Q6IC98 578 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 C22orf39Q6P5X5 142 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 GPRIN3Q6ZVF9 776 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 UCMAQ8WVF2 138 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 TIMM22Q9Y584 194 aa19.45■□□□□ 0.7
CLIP3-206ENST00000593074 NPIPB15A6NHN6 443 aaPredicted RBP19.44■□□□□ 0.7
CLIP3-206ENST00000593074 CHEK2O96017 543 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 PCBP2Q15366 365 aaKnown RBP eCLIP19.44■□□□□ 0.7
CLIP3-206ENST00000593074 TRIP10Q15642 601 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 OGFRL1Q5TC84 451 aaPredicted RBP19.44■□□□□ 0.7
CLIP3-206ENST00000593074 TMEM126BQ8IUX1 230 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 LEMD2Q8NC56 503 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 LKAAEAR1Q8TD35 194 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 CXorf56Q9H5V9 222 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 TMEM181Q9P2C4 612 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 CD300AQ9UGN4 299 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 CROTQ9UKG9 612 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 PPIL1Q9Y3C6 166 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 PRSS21Q9Y6M0 314 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 LAMA2P24043 3122 aaKnown RBP19.44■□□□□ 0.7
CLIP3-206ENST00000593074 SOBPA7XYQ1 873 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 AGAP14A8MT82 685 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 EPCAMP16422 314 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 HOXA9P31269 272 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 IRS1P35568 1242 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 PTPN5P54829 565 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 TRIM25Q14258 630 aaKnown RBP19.44■□□□□ 0.7
CLIP3-206ENST00000593074 CHRNA6Q15825 494 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 MYLK3Q32MK0 819 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 MACC1Q6ZN28 852 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 FRA10AC1Q70Z53 315 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 SPATA19Q7Z5L4 167 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 TSPAN33Q86UF1 283 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 RETREG3Q86VR2 466 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 PDPRQ8NCN5 879 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 FAM156AQ8NDB6 213 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 RIN3Q8TB24 985 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 ESAMQ96AP7 390 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 CCT7Q99832 543 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 HTATIP2Q9BUP3 242 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 TNPO3Q9Y5L0 923 aaKnown RBP19.44■□□□□ 0.7
CLIP3-206ENST00000593074 ST14Q9Y5Y6 855 aa19.44■□□□□ 0.7
CLIP3-206ENST00000593074 NR5A2O00482 541 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 GIPC1O14908 333 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 GRM6O15303 877 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 XYLBO75191 536 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 HNRNPA1P09651 372 aaKnown RBP eCLIP19.43■□□□□ 0.7
CLIP3-206ENST00000593074 RGS4P49798 205 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 LRRC36Q1X8D7 754 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 SLC5A9Q2M3M2 681 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 SFT2D3Q587I9 215 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 C7orf61Q8IZ16 206 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 PLCD3Q8N3E9 789 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 PCYOX1LQ8NBM8 494 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 SCRN2Q96FV2 425 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 KLHL32Q96NJ5 620 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 NR1H4Q96RI1 486 aaPredicted RBP19.43■□□□□ 0.7
CLIP3-206ENST00000593074 MYCBPQ99417 103 aaPredicted RBP19.43■□□□□ 0.7
CLIP3-206ENST00000593074 CRLS1Q9UJA2 301 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 NDUFAF1Q9Y375 327 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 GPR45Q9Y5Y3 372 aa19.43■□□□□ 0.7
CLIP3-206ENST00000593074 PRSS51A0A1B0GVH4 220 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 PRORSD1PA6NEY8 169 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 A6NHS1 94 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 NEDD8-MDP1E9PL57 170 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 UGT1A6P19224 532 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 TCN1P20061 433 aaPredicted RBP19.42■□□□□ 0.7
CLIP3-206ENST00000593074 CAPN3P20807 821 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 UGT1A1P22309 533 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 UGT1A4P22310 534 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 UGT1A3P35503 534 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 UGT1A5P35504 534 aa19.42■□□□□ 0.7
CLIP3-206ENST00000593074 CRTC1Q6UUV9 634 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms