RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 TMEM178BH3BS89 294 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 WDHD1O75717 1129 aaPredicted RBP5.03□□□□□ -1.6
NUP88-213ENST00000576862 ATP1A1P05023 1023 aaKnown RBP5.03□□□□□ -1.6
NUP88-213ENST00000576862 SELLP14151 372 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 TMEM11P17152 192 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 GM2AP17900 193 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 NR1D1P20393 614 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 MT3P25713 68 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 HOXA13P31271 388 aaPredicted RBP5.03□□□□□ -1.6
NUP88-213ENST00000576862 MSH2P43246 934 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 AMPHP49418 695 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 CAMPP49913 170 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 CDH8P55286 799 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 PLIN5Q00G26 463 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 HYAL1Q12794 435 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 CRYMQ14894 314 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 RARS2Q5T160 578 aaKnown RBP5.03□□□□□ -1.6
NUP88-213ENST00000576862 TMEM154Q6P9G4 183 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 CLEC4GQ6UXB4 293 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 TICAM1Q8IUC6 712 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 CEP97Q8IW35 865 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 DCUN1D3Q8IWE4 304 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 TTC39CQ8N584 583 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 RBM15BQ8NDT2 890 aaKnown RBP5.03□□□□□ -1.6
NUP88-213ENST00000576862 SLC24A4Q8NFF2 622 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 PHF21AQ96BD5 680 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 ALG14Q96F25 216 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 LINGO1Q96FE5 620 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 NCAPGQ9BPX3 1015 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 SRSF8Q9BRL6 282 aaKnown RBP5.03□□□□□ -1.6
NUP88-213ENST00000576862 FTOQ9C0B1 505 aaKnown RBP eCLIP5.03□□□□□ -1.6
NUP88-213ENST00000576862 PAG1Q9NWQ8 432 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 TRMT1Q9NXH9 659 aaKnown RBP5.03□□□□□ -1.6
NUP88-213ENST00000576862 TAAR2Q9P1P5 351 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 FBXL17Q9UF56 701 aa5.03□□□□□ -1.6
NUP88-213ENST00000576862 EFCAB5A4FU69 1503 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 GRIN2AQ12879 1464 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 MAGI1Q96QZ7 1491 aaPredicted RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 A0A1W2PR77 199 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 FAM172BPA6NC97 362 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 GRID2O43424 1007 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 HS6ST1O60243 411 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 DOK2O60496 412 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 ZNF217O75362 1048 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 PLGP00747 810 aaPredicted RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 PTMAP06454 111 aaKnown RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 SP1P08047 785 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 SRPRAP08240 638 aaKnown RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 ACTN1P12814 892 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 MMP14P50281 582 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 ARF3P61204 181 aaPredicted RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 ARF1P84077 181 aaKnown RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 IKQ13123 557 aaPredicted RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 IRF3Q14653 427 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 MVPQ14764 893 aaKnown RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 ZNF628Q5EBL2 1059 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 SIRPB2Q5JXA9 342 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 WDR78Q5VTH9 848 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 C19orf48Q6RUI8 117 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 GCSAMQ8N6F7 178 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 DMBX1Q8NFW5 382 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 PGAM5Q96HS1 289 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 ZNF583Q96ND8 569 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 NEUROD6Q96NK8 337 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 BLOC1S4Q9NUP1 217 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 OGFRQ9NZT2 677 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 MARCH4Q9P2E8 410 aaPredicted RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 POLG2Q9UHN1 485 aa5.02□□□□□ -1.61
NUP88-213ENST00000576862 EIF4G3O43432 1585 aaKnown RBP5.02□□□□□ -1.61
NUP88-213ENST00000576862 SYNJ2O15056 1496 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 CASKIN1Q8WXD9 1431 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 TMEM8BA6NDV4 472 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 FGF17O60258 216 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 TPPPO94811 219 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 PON1P27169 355 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 AHRP35869 848 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 PDSS1Q5T2R2 415 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 PLXDC2Q6UX71 529 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 FAM43BQ6ZT52 329 aaPredicted RBP5.01□□□□□ -1.61
NUP88-213ENST00000576862 ADGRF2Q8IZF7 708 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 SLC5A8Q8N695 610 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 METTL27Q8N6F8 245 aaPredicted RBP5.01□□□□□ -1.61
NUP88-213ENST00000576862 GSDMBQ8TAX9 411 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 PGLYRP2Q96PD5 576 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 UHRF2Q96PU4 802 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 EPYCQ99645 322 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 TXLNGQ9NUQ3 528 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 TSPYL4Q9UJ04 414 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 CMAHPQ9Y471 501 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 KIAA0586Q9BVV6 1533 aa5.01□□□□□ -1.61
NUP88-213ENST00000576862 NUP160Q12769 1436 aa5□□□□□ -1.61
NUP88-213ENST00000576862 CDRT15L2A8MXV6 281 aa5□□□□□ -1.61
NUP88-213ENST00000576862 PTGES3LE9PB15 166 aa5□□□□□ -1.61
NUP88-213ENST00000576862 SYNGR3O43761 229 aa5□□□□□ -1.61
NUP88-213ENST00000576862 KRT86O43790 486 aa5□□□□□ -1.61
NUP88-213ENST00000576862 ZBED4O75132 1171 aa5□□□□□ -1.61
NUP88-213ENST00000576862 IGHV4-39P01824 125 aa5□□□□□ -1.61
NUP88-213ENST00000576862 RB1P06400 928 aa5□□□□□ -1.61
NUP88-213ENST00000576862 CLTBP09497 229 aa5□□□□□ -1.61
NUP88-213ENST00000576862 TIMP3P35625 211 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms