RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 FBXO39Q8N4B4 442 aa12.82□□□□□ -0.36
CNOT1-220ENST00000569916 OR52K1Q8NGK4 314 aa12.82□□□□□ -0.36
CNOT1-220ENST00000569916 HNRNPLLQ8WVV9 542 aaKnown RBP12.82□□□□□ -0.36
CNOT1-220ENST00000569916 CCDC97Q96F63 343 aaPredicted RBP12.82□□□□□ -0.36
CNOT1-220ENST00000569916 STN1Q9H668 368 aaKnown RBP12.82□□□□□ -0.36
CNOT1-220ENST00000569916 NLE1Q9NVX2 485 aaPredicted RBP12.82□□□□□ -0.36
CNOT1-220ENST00000569916 CPNE7Q9UBL6 633 aa12.82□□□□□ -0.36
CNOT1-220ENST00000569916 ZKSCAN5Q9Y2L8 839 aa12.82□□□□□ -0.36
CNOT1-220ENST00000569916 LOXL2Q9Y4K0 774 aa12.82□□□□□ -0.36
CNOT1-220ENST00000569916 URB1O60287 2271 aaKnown RBP12.82□□□□□ -0.36
CNOT1-220ENST00000569916 IGHV5-10-1A0A0J9YXX1 117 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 PDZK1P1A8MUH7 402 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 SGTAO43765 313 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 POP7O75817 140 aaKnown RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 TNFSF15O95150 251 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 ZSCAN5DPP0CG00 497 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 HOXB3P14651 431 aaPredicted RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 VCLP18206 1134 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 MSH3P20585 1137 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 ITGALP20701 1170 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 IDSP22304 550 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 RPL10P27635 214 aaKnown RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 ITPKBP27987 946 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 MC4RP32245 332 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 LIMK2P53671 638 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 EPHA4P54764 986 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 DRG2P55039 364 aaKnown RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 DMPKQ09013 629 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 CDH17Q12864 832 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 SEPT6Q14141 434 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 C16orf72Q14CZ0 275 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 COL28A1Q2UY09 1125 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 AGAP9Q5VTM2 703 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 TMEM220Q6QAJ8 160 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 ABRAXAS1Q6UWZ7 409 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 WASH2PQ6VEQ5 465 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 FAM83HQ6ZRV2 1179 aaPredicted RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 DET1Q7L5Y6 550 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 SNX20Q7Z614 316 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 NXPE1Q8N323 547 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 CCDC89Q8N998 374 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 AVL9Q8NBF6 648 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 ZNF248Q8NDW4 579 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 OR4D9Q8NGE8 314 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 OR10G6Q8NH81 332 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 NAT14Q8WUY8 206 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 MAIP1Q8WWC4 291 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 TMEM159Q96B96 161 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 SH3KBP1Q96B97 665 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 ULK4Q96C45 1275 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 ZNF514Q96K75 400 aaPredicted RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 CCDC74BQ96LY2 380 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 WASH6PQ9NQA3 447 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 RAB6BQ9NRW1 208 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 TMEM9Q9P0T7 183 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 PAK5Q9P286 719 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 ZNF624Q9P2J8 865 aaPredicted RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 CRLS1Q9UJA2 301 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 DRG1Q9Y295 367 aaKnown RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 DNMT3AQ9Y6K1 912 aaPredicted RBP12.81□□□□□ -0.36
CNOT1-220ENST00000569916 CFAP47Q6ZTR5 3102 aa12.81□□□□□ -0.36
CNOT1-220ENST00000569916 TRBV5-4A0A0C4DH59 114 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 MROH6A6NGR9 719 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 LILRA5A6NI73 299 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 AGRPO00253 132 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 RRP8O43159 456 aaKnown RBP12.8□□□□□ -0.36
CNOT1-220ENST00000569916 DUX1O43812 170 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 KCNJ13O60928 360 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 THRAP10827 490 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 XRCC1P18887 633 aaPredicted RBP12.8□□□□□ -0.36
CNOT1-220ENST00000569916 ITIH1P19827 911 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 PSMA3P25788 255 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 RPL22P35268 128 aaKnown RBP12.8□□□□□ -0.36
CNOT1-220ENST00000569916 ETV5P41161 510 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 SLC19A1P41440 591 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 GRIA1P42261 906 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 ABCG1P45844 678 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 CCDC173Q0VFZ6 552 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 CLCA4Q14CN2 919 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 LONRF2Q1L5Z9 754 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 BCL7AQ4VC05 210 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 FNBP1LQ5T0N5 605 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 XKR5Q6UX68 686 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 LRRC69Q6ZNQ3 347 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 AMZ2Q86W34 360 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 BEND7Q8N7W2 519 aaPredicted RBP12.8□□□□□ -0.36
CNOT1-220ENST00000569916 PRELID2Q8N945 189 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 RCBTB1Q8NDN9 531 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 STYXQ8WUJ0 223 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 SGF29Q96ES7 293 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 CRELD1Q96HD1 420 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 AHCYL2Q96HN2 611 aaKnown RBP12.8□□□□□ -0.36
CNOT1-220ENST00000569916 CDKN2AIPNLQ96HQ2 116 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 CMKLR1Q99788 373 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 DPYSL5Q9BPU6 564 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 TBC1D10AQ9BXI6 508 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.8□□□□□ -0.36
CNOT1-220ENST00000569916 FAM96AQ9H5X1 160 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 UCK1Q9HA47 277 aa12.8□□□□□ -0.36
CNOT1-220ENST00000569916 POT1Q9NUX5 634 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms